Sequence of DPV Cereal yellow dwarf virus-RPV
Cereal yellow dwarf virus - RPV isolate RPV05P4b02 replicase and coat protein genes, partial cds; and 17k protein-like gene, complete sequence.
ACC No: DQ988088
Dated: 2007-06-15 | Length: 1331 | CRC: 425938387
ID DQ988088; SV 1; linear; genomic RNA; STD; VRL; 1331 BP.
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AC DQ988088;
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DT 10-JAN-2007 (Rel. 90, Created)
DT 15-JUN-2007 (Rel. 92, Last updated, Version 3)
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DE Cereal yellow dwarf virus - RPV isolate RPV05P4b02 replicase and coat
DE protein genes, partial cds; and 17k protein-like gene, complete sequence.
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KW .
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OS Cereal yellow dwarf virus - RPV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-1331
RX PUBMED; 17216137.
RA Robertson N.L., French R.;
RT "Genetic structure in natural populations of barley/cereal yellow dwarf
RT virus isolates from Alaska";
RL Arch. Virol. 152(5):891-902(2007).
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RN [2]
RP 1-1331
RA Robertson N.L., French R.;
RT ;
RL Submitted (07-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL Avenue, Palmer, AK 99645, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1331
FT /organism="Cereal yellow dwarf virus - RPV"
FT /specific_host="Hordeum vulgare L. (barley)"
FT /isolate="RPV05P4b02"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2002"
FT /db_xref="taxon:191217"
FT CDS <1. .539
FT /codon_start=3
FT /product="replicase"
FT /note="ORF2"
FT /db_xref="GOA:A1YH03"
FT /db_xref="UniProtKB/TrEMBL:A1YH03"
FT /protein_id="ABL67547.1"
FT /translation="RNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLAQRVPGVQK
FT SGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKVEVSGELEF
FT CSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVLHEPRHDRELCL
FT KLQEWLISDVTTKLN"
FT CDS 725. .>1331
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /db_xref="GOA:A1YH04"
FT /db_xref="UniProtKB/TrEMBL:A1YH04"
FT /protein_id="ABL67546.1"
FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGTARRGR
FT RRRPVGPRRGRTPRSGGGSRGETLVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT misc_feature 750. .1211
FT /note="similar to 17k protein; ORF4"
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SQ Sequence 1331 BP; 350 A; 341 C; 316 G; 324 T; 0 other;
dq988088 Length: 1331 15-JUN-2007 Type: N Check: 3573 ..
1 tgagaaatcg cctaacaatc gactgcaacg agctcaccag acaccttagg
51 gctgtttggc ttcaaggcat atcaaactcg gttttatgcc tgtcggatgg
101 aaccatgtta gctcaacgag tacccggcgt gcagaaaagt ggctcgtaca
151 acacttcgtc cacaaactca cgcgtccggg tcatggctgc ctatcactgt
201 ggcgcctcgt gggctatcgc tatgggtgat gatgccctgg aagctccaga
251 tacagacttg tcaaaatata aagatctggg cttcaaagtc gaggttagcg
301 gagagttgga attctgttcg cacattttca agacccctaa cctcgccatt
351 ccggttaatg aaaacaaaat gttgtaccgc ttgatccacg ggtacaatcc
401 ggaatgtggc aattttgagg tggttcaaaa ctatctcaat gcagctgtct
451 cagtgctgca tgagccccga catgatcggg agctttgcct aaaacttcaa
501 gagtggttga tttctgacgt caccacaaaa ctaaactgag cacaaaacta
551 gccggacaaa cgtaagttgc aagtgccgga agtcaagtct tacacataag
601 cccaacattg attttcattt gttagcggga tttgcccttg gatttatatc
651 ctcaatcccc atttcagttg ttggtgttta tctagtctac cttaaggttt
701 cgacccacat tcgtgaaatt gttaatgagt acggtcgtcc ttagatccaa
751 tggcaatggt tcgcgcagac gcagacagag agtcgctcgg cgaaggcctg
801 ctgcaagaac gcagccagtg gttgtggtca cttccaacgg cacagccagg
851 cgcggaagac gccgacgacc agtaggtcct cggcgaggaa gaactccaag
901 atctggagga ggaagccgtg gcgagacact cgttttctca aaggattcac
951 tcgcgggcaa ctcctctgga agtatcacct tcgggccgtc tctatcagag
1001 tatccggcat tccagaatgg agtactcaag gcctaccatg aatataagat
1051 cacaaattgt gtcttacagt tcgtcagcga ggcctcttcc acagcagccg
1101 gctccatctc ttatgagttg gacccccatt gcaaagcatc ttcactcgca
1151 tcaacgatca ataagttcac aatcaccaaa actggtgcgc ggagcttccc
1201 agcgaagatg atcaacgggt tagagtggca cccttcagac gaagatcaat
1251 tccgtatcct ctataaaggg aacggtgcct cttccgtagc tggttctttc
1301 aagattacac ttcgtgtaca gctacaaaac c