Sequence of DPV Cereal yellow dwarf virus-RPV

Cereal yellow dwarf virus - RPV isolate RPV11P1b03 replicase and coat protein genes, partial cds; and 17k protein gene, complete cds.

ACC No: DQ988099

Dated: 2007-06-15 | Length: 1363 | CRC: -2134121430

                
ID   DQ988099; SV 1; linear; genomic RNA; STD; VRL; 1363 BP.
XX
AC   DQ988099;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV11P1b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus - RPV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1363
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1363
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1363
FT                   /organism="Cereal yellow dwarf virus - RPV"
FT                   /specific_host="Horeeum vulgare L. (barley)"
FT                   /isolate="RPV11P1b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:191217"
FT   CDS             <1. .571
FT                   /codon_start=2
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH34"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH34"
FT                   /protein_id="ABL67579.1"
FT                   /translation="FDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGT
FT                   MLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLG
FT                   FKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVL
FT                   HELRHDRELCLKLQEWLISDVTTKLN"
FT   CDS             757. .>1363
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH35"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH35"
FT                   /protein_id="ABL67577.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             782. .1243
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH24"
FT                   /protein_id="ABL67578.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGVEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1363 BP; 351 A; 338 C; 334 G; 340 T; 0 other;

dq988099 Length: 1363  15-JUN-2007  Type: N  Check: 8220  ..

       1  gttcgattgg atgctcgcgg atgacatgga ggtgagaaat cgcctaacaa
      51  tcgactgcaa cgagctcacc agacacctta gggctgtttg gcttcaaggc
     101  atatcaaact cggttttgtg cctgtcggat ggaaccatgt tagctcaacg
     151  agtacccggc gtgcagaaaa gtggttcgta caacacttcg tccacaaact
     201  cacgcgtccg ggtcatggct gcctatcatt gtggcgcctc gtgggctatc
     251  gctatgggtg atgatgccct ggaagctcca gatacagact tgtcaaaata
     301  taaagatctg ggcttcaaag tcgaggttag cggagagttg gaattctgtt
     351  cgcacatttt caagacccct aacctcgcca ttccggttaa tgaaaacaaa
     401  atgttgtacc gcttgatcca cgggtacaat ccggaatgtg gcaattttga
     451  ggtggttcaa aactatctca atgcagctgt ctcagtgctg catgagctcc
     501  gacatgatcg ggagctttgc ctaaaacttc aagagtggtt gatttctgac
     551  gtcaccacaa aactaaactg agcacaaaac tagccggaca aacgtaagtt
     601  gcaagtgccg gaagtcaagt cttacacata agcccaacat tgattttcat
     651  ttgttagcgg gatttgccct tggatttata tcctcaatcc ccatttcagt
     701  tgttggtgtt tatctagtct accttaaggt ttcgacccac attcgtgaaa
     751  ttgttaatga gtacggtcgt ccttagatcc aatggcaatg gttcgcgcag
     801  acgcagacag agagtcgctc ggcgaaggcc tgctgcaaga acgcagccag
     851  tggttgtggt cacttccaac ggctcagcca ggcgtggaag acgccgacga
     901  ccagttggtc ctcggcgagg aagaactcca agatctggag gaggaagccg
     951  tggcgagaca ttcgttttct caaaggattc actcgcgggc aactcctctg
    1001  gaagtatcac cttcgggccg tctctatcag agtatccggc attccagaat
    1051  ggagtactca aggcctacca tgaatataag atcacaaatt gtgtcttaca
    1101  gttcgtcagc gaggcctctt ccacagcagc cggctccatc tcttatgagt
    1151  tggaccccca ttgcaaagca tcttcactcg catcaacgat caataagttc
    1201  acaatcacca aaactggtgc gcggagcttc ccagcgaaga tgatcaacgg
    1251  gttagagtgg cacccctcag atgaggatca gttccgaatt ctttacaaag
    1301  ggaacggtgc ttcttctgtg gctgggtctt ttaagatcac tcttagagtc
    1351  cagctacaaa acc