Sequence of DPV Cereal yellow dwarf virus-RPV

Cereal yellow dwarf virus - RPV isolate RPV12P1b03 replicase and coat protein genes, partial cds; and 17k protein gene, complete cds.

ACC No: DQ988100

Dated: 2007-06-15 | Length: 1369 | CRC: -496280389

                
ID   DQ988100; SV 1; linear; genomic RNA; STD; VRL; 1369 BP.
XX
AC   DQ988100;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV12P1b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus - RPV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1369
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1369
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1369
FT                   /organism="Cereal yellow dwarf virus - RPV"
FT                   /specific_host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV12P1b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:191217"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH37"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH37"
FT                   /protein_id="ABL67582.1"
FT                   /translation="SVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSD
FT                   GTMLSQVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIVMGDDALEAPDTDLSKYKD
FT                   LGFKVEVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASS
FT                   VLHELRHDQELCALLHMWLVSGITTKDN"
FT   CDS             763. .>1369
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH38"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH38"
FT                   /protein_id="ABL67580.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             788. .1249
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH39"
FT                   /protein_id="ABL67581.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1369 BP; 354 A; 346 C; 333 G; 336 T; 0 other;

dq988100 Length: 1369  15-JUN-2007  Type: N  Check: 8658  ..

       1  tcagtctccg attggatgct cgcagacgat atggaggtaa gaaatcgtct
      51  taccatcgac tgcaatgagc tcaccagaca ccttcgcgct gtctggttgc
     101  aaggcatatc gaactctgtt ttatgccttt cggatggaac catgctatcc
     151  caggttaagc ccggggtcca aaagagtggg tcgtacaata cgtcatctac
     201  gaactctagg atccgggtta tggctgccta tcattgtggc gcctcctggg
     251  cgatagtgat gggggatgat gccctcgaag cgccagatac agatttgagc
     301  aagtacaaag atctgggctt caaagtcgag gttagcaagg agctagaatt
     351  ctgttcacac atcttcaagt ctcctaccct cgccattccg gtcaatgcca
     401  acaagatgtt gtaccgcttg atccacgggt acaatccgga atgtggaaac
     451  gctgaggtaa ttgttaatta cctcaatgca gccagctcag tgctgcatga
     501  gctccgccat gatcaggagc tttgcgcgtt attgcatatg tggttagtat
     551  ctggcataac cacaaaagat aactgagcag caaaaccagc cgagcatacg
     601  taagttgcaa gcgtcggagg tttagtctta cacataagcc caagattgat
     651  ttcaaattca tagcgggatt cgctacaggt ttcatatctt caatccccat
     701  ctcagttctt ggtgtttatt acgtctacct aaggatctcg acgcatattc
     751  gtgaaattgt taatgagtac ggtcgtcctt agatccaatg gcaatggttc
     801  gcgcagacgc agacagagag tcgctcggcg aaggcctgct gcaagaacgc
     851  agccagtggt tgtggtcact tccaacggct cagccaggcg cggaagacgc
     901  cgacgaccag ttggtcctcg gcgaggaaga actccaagat ctggaggagg
     951  aagccgtggc gagacattcg ttttctcaaa ggattcactc gcaggcaact
    1001  cctctggaag tatcaccttc gggccgtctc tatcagagta tccggcattc
    1051  cagaatggag tactcaaggc ctaccatgaa tataagatca caaattgtgt
    1101  cttacagttc gtcagcgagg cctcttccac agcagccggc tccatctctt
    1151  atgagttgga cccccattgc aaagcatctt cactcgcatc aacgatcaat
    1201  aagttcacaa tcaccaaaac tggtgcgcgg agcttcccag cgaagatgat
    1251  taacgggtta gagtggcacc cttcagacga agatcaattc cgtatcctct
    1301  ataaagggaa cggtgcctct tccgtagctg gttctttcaa gattacactt
    1351  cgtgtacagc tacaaaacc