Sequence of DPV Cereal yellow dwarf virus-RPV

Cereal yellow dwarf virus - RPV isolate RPV13P4o04 replicase and coat protein genes, partial cds; and 17k protein gene, complete cds.

ACC No: DQ988106

Dated: 2007-06-15 | Length: 1354 | CRC: 1440233869

                
ID   DQ988106; SV 1; linear; genomic RNA; STD; VRL; 1354 BP.
XX
AC   DQ988106;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
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DE   Cereal yellow dwarf virus - RPV isolate RPV13P4o04 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus - RPV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1354
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1354
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1354
FT                   /organism="Cereal yellow dwarf virus - RPV"
FT                   /specific_host="Avena sativa L. (oats)"
FT                   /isolate="RPV13P4o04"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:191217"
FT   CDS             <1. .561
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH54"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH54"
FT                   /protein_id="ABL67599.1"
FT                   /translation="MLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLS
FT                   QVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKV
FT                   EVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASSVLHEL
FT                   RHDQELCALLHMWLVSGITTKDN"
FT   CDS             748. .>1354
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH55"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH55"
FT                   /protein_id="ABL67597.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAVRTQPVVVVTSNGPARRGR
FT                   RRGPARPRRRRTPGLGGGGRGETFVFTKDSLAGNSSGSITFGPSLSDYPAFQNGVLKAY
FT                   HEYKITGCILQFVSEASSTAAGSIAYELDPHCKISSLASTNNKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             773. .1234
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="UniProtKB/TrEMBL:A1YGZ0"
FT                   /protein_id="ABL67598.1"
FT                   /translation="MAMVRADADRESLGEGLLSERSQWLWSLPTAQPGAEDAEDQLVLG
FT                   EEELQDSEEEAVARHLFSQRTHSRATPLEVSPSGRLYQTIRHSRMEYSRPTMSIRSQVV
FT                   SYSSSARPLPQQPVPSLMNWTPIAKSLRSHQPTISSQSPKLVRGASQRR"
XX
SQ   Sequence 1354 BP; 351 A; 344 C; 330 G; 329 T; 0 other;

dq988106 Length: 1354  15-JUN-2007  Type: N  Check: 9870  ..

       1  atgctcgcag acgatatgga ggtaagaaat cgtcttacca tcgactgcaa
      51  tgagctcacc agacaccttc gcgctgtctg gttgcaaggc atatcaaact
     101  ctgttttatg cctttcggat ggaaccatgc tatcccaggt taagcccggg
     151  gtccaaaaga gtgggtcgta caatacgtca tctacgaact ctaggatccg
     201  ggttatggct gcctatcatt gtggcgcctc ctgggcgata gcgatggggg
     251  atgatgccct cgaagcgcca gatacagatt tgagcaagta caaagatctg
     301  ggcttcaaag tcgaggttag caaggagcta gaattctgtt cacacatctt
     351  caagtctcct accctcgcca ttccggtcaa tgccaacaag atgttgtacc
     401  gcttgatcca cgggtacaat ccggaatgtg gaaacgctga ggtaattgtt
     451  aattacctca atgcagccag ctcagtgctg catgagctcc gccatgatca
     501  ggagctttgc gcgttattgc atatgtggtt agtatctggc ataaccacaa
     551  aagataactg agcagcaaaa ccagccgagc atacgtaagt tgcaagcgtc
     601  ggaggtttag tcttacacat aagcccaaga ttgatttcaa atttatagcg
     651  ggattcgcta caggtttcat atcttcaatc cccatctcag ttcttggtgt
     701  ttattacgtc tacctaagga tctcgacgca tattcgtgaa attgttaatg
     751  agtacggtcg tccttagatc caatggcaat ggttcgcgca gacgcagaca
     801  gagagtcgct cggcgaaggc ctgctgtcag aacgcagcca gtggttgtgg
     851  tcacttccaa cggcccagcc aggcgcggaa gacgccgagg accagctcgt
     901  cctcggcgaa gaagaactcc aggactcgga ggaggaggcc gtggcgagac
     951  atttgttttc acaaaggact cactcgcggg caactcctct ggaagtatca
    1001  ccttcgggcc gtctttatca gactatccgg cattccagaa tggagtactc
    1051  aaggcctacc atgagtataa gatcacaggt tgtatcttac agttcgtcag
    1101  cgaggcctct tccacagcag ccggttccat cgcttatgaa ttggaccccc
    1151  attgcaaaat ctcttcgctc gcatcaacca acaataagtt cacaatcacc
    1201  aaaactggtg cgaggagctt cccagcgaag atgattaacg ggttagagtg
    1251  gcacccttca gacgaagatc aattccgtat cctctataaa gggaacggtg
    1301  cctcttccgt agctggttct ttcaagatta cacttcgtgt acagctacaa
    1351  aacc