Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus - [Potato] isolate Happur segment DNA A, complete sequence.
ACC No: EF043230
Dated: 2006-12-11 | Length: 2739 | CRC: 2074515121
ID EF043230; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
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AC EF043230;
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DT 11-DEC-2006 (Rel. 90, Created)
DT 11-DEC-2006 (Rel. 90, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus - [Potato] isolate Happur segment DNA A,
DE complete sequence.
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KW .
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OS Tomato leaf curl New Delhi virus - [Potato]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2739
RA Sumiya K.V., Malathi V.G.;
RT ;
RL Submitted (05-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa
RL Campus, New Delhi, Delhi 110012, India
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FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /organism="Tomato leaf curl New Delhi virus - [Potato]"
FT /segment="DNA A"
FT /specific_host="potato"
FT /isolate="Happur"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="2005"
FT /virion
FT /db_xref="taxon:270145"
FT gene 120. .458
FT /gene="AV2"
FT CDS 120. .458
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ABL09090.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDI
FT ILVLRAKNYGEATSRYHLFNARFESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ
FT KTQNVQNV"
FT gene 280. .1053
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ABL09089.1"
FT /translation="MVKRPADIIFSTPVSKVRRRLNFDSPFGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGSGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(310. .795)
FT /gene="AC5"
FT CDS complement(310. .795)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /protein_id="ABL09095.1"
FT /translation="MHVLHRCCARFIVKHVKNFPKILWRSCRTTVTDQKKHDTVSMVFC
FT LDVFIHPYLPQHIDRFHTKSLPYAMCESRSSGNITNTHDFANMRDIVPRFKGLHLTRAF
FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSKGAVEVETSAYFRNGR"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="ABL09093.1"
FT /translation="MITDSRTGESITADRAESGVYTWEIRNPLYFKILKHNSRPFLRQH
FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDRLGVIGI
FT YNVIRAVYHVLDNVMEQTIDVWTSYDIKLDIY"
FT gene complement(1177. .1596)
FT /gene="AC2"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="ABL09092.1"
FT /translation="MQSLSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCTYYISIH
FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP"
FT gene complement(1499. .2584)
FT /gene="AC1"
FT CDS complement(1499. .2584)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiator protein"
FT /protein_id="ABL09091.1"
FT /translation="MTPPRRFRINAKNYFLTYPKCSLTKEDALSQLQTLETPTAKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH
FT NLNTNLDRIFQPPSEIYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNTSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIAPTEEEEEHSQEAS"
FT gene complement(2251. .2427)
FT /gene="AC4"
FT CDS complement(2251. .2427)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ABL09094.1"
FT /translation="MGLRISMFSSNSKANSSAKITDSSTWFPQVGQHISIRTFRELNQH
FT RTSKSTSTKTETF"
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SQ Sequence 2739 BP; 740 A; 580 C; 611 G; 808 T; 0 other;
ef043230 Length: 2739 11-DEC-2006 Type: N Check: 5802 ..
1 accgaatggc cgcgcaattt tttaggtggg ccctcaacca atgaaattcg
51 agctacatgg cttctttgct gcgtggggac caataaatag acttactcac
101 caagtttgga tccacaaaca tgtgggatcc attattgcac gaatttccag
151 aaagcgttca tggtctaagg tgcatgctag ctgtaaaata tctccaagag
201 atagaaaaga actattctcc agacacagtc ggctacgatc ttgtccgaga
251 tatcattctt gttcttcgag caaagaacta tggtgaagcg accagcagat
301 atcatctttt caacgcccgt ttcgaaagta cgccgacgtc tcaacttcga
351 cagccccttt ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag
401 caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga
451 atgtatagaa gtcccgacgt gccaaggggc tgtgaaggcc cttgtaaggt
501 gcagtccttt gaatctaggc acgatgtctc tcatattggc aaagtcatgt
551 gtgttagtga tgttacccga ggatctggac tcacacatcg cgtagggaag
601 cgattttgtg tgaaatctgt ctatgtgctg gggaagatat ggatggatga
651 aaacatcaag acaaaaaacc atactaacag tgtcatgttt tttttggtcc
701 gtgaccgtcg tcctacagga tctccacaag attttgggga agtttttaac
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcaa gtcttacgga agtggcatgc tactgtgacg ggaggaacat
851 atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat
901 tatgttgtct ataaccaaca agaggccggc aagtatgaga atcatactga
951 gaacgcatta atgttgtata tggcctgtac tcatgcatca aatcctgtgt
1001 atgctacttt gaaaatccgg atctatttct atgattcggt aacaaattaa
1051 taaatatcga gttttatatc atatgaagtc catacatcaa tcgtttgttc
1101 cattacatta tccaaaacat gataaactgc tcttattaca ttataaattc
1151 ctattacacc aagcctatcc aggtacctaa ggacctgtgt tttgaagact
1201 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt
1301 gtatttgaat attgatgatg tcgtgctgtc ttaggaaggg tctgctgttg
1351 tgtttcaaaa ttttgaaata caggggattt cgaatttccc aggtatatac
1401 gccactctct gctcgatccg cagtgatgga ctcccctgtg cgtgaatccg
1451 tgatcatggc agtggatcga tatgtaatac gtacacccac actgcagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt
1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgataaaga ctgcattctt
1601 gattgcccac tgcttcagtg ctgcgttttt ttcttcgtcc agatattcct
1651 tatagctggt gtttggacct ttattgcaca ggaagatagt gggaattcca
1701 cctttaatca tgactggctt tccgtacttc gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaaatgctt tagatagtgt ggatcaacgt
1801 catcaatgac gttgtaccag gcctcattgc tatacacctt tgggctcaga
1851 tcaagatgtc cacataagta attatggggt cctaagcaac gagcccacat
1901 tgttttgccc gttctactat ccccctctat gactatgctt atgggcctga
1951 aaggccgcgc agcggcacac accacattgg acgacaccca atcgacgagt
2001 tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag aaacataaat
2051 ctcagaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa
2101 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaacgca
2151 tcgtctttat ttcccgtgtt aatcgcctga gcatatgcat cgttcgccgt
2201 ttgttgacct ccacgagcag atcgtccatc gatctggaaa acaccccatt
2251 ctagaacgtc tccgtctttg tcgatgtact ttttgacgtc cgatgctgat
2301 ttagctccct gaatgttcgg atggaaatgt gctgaccgac ttggggaaac
2351 caagtcgaag aatctgttat ttttgcactg gaatttgcct tcgaattgga
2401 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacaaatc
2451 ttaatgaatt ttttcgcagt tggggtttct agggtttgca gttgggaaag
2501 tgcgtcctcc ttagttagag agcactttgg atatgtgagg aaatagtttt
2551 tggcatttat tctaaaacga cgtggtggag tcataaaact tgtcgttttg
2601 attcggcgtc cctcaacttg ctctatgtaa ttggtgtctg gagtcccata
2651 tataggtaag acaccatatg gcagaattgt aattttgaaa agaaaattac
2701 tttaattcaa attcctaaag cggccattca tctaatatt