Sequence of DPV Turnip yellows virus
Turnip yellows virus isolate pM0929-3 RdRp and coat protein genes, partial cds.
ACC No: EF079908
Dated: 2007-03-06 | Length: 1384 | CRC: 2042869663
ID EF079908; SV 1; linear; genomic RNA; STD; VRL; 1384 BP.
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AC EF079908;
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DT 06-MAR-2007 (Rel. 90, Created)
DT 06-MAR-2007 (Rel. 90, Last updated, Version 1)
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DE Turnip yellows virus isolate pM0929-3 RdRp and coat protein genes, partial
DE cds.
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KW .
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OS Turnip yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-1384
RA Xiang H., Shang Q., Han C., Li D., Yu J.;
RT "First report of Turnip yellows virus in China";
RL Unpublished.
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RN [2]
RP 1-1384
RA Han C.;
RT ;
RL Submitted (24-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100094, China
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FH Key Location/Qualifiers
FH
FT source 1. .1384
FT /organism="Turnip yellows virus"
FT /specific_host="cabbage"
FT /isolate="pM0929-3"
FT /mol_type="genomic RNA"
FT /country="China:Liaoning"
FT /db_xref="taxon:131083"
FT CDS <1. .585
FT /codon_start=1
FT /product="RdRp"
FT /protein_id="ABO13897.1"
FT /translation="SVADWMLQDDMIVRNRLTIDLNPVTERLRSCWLRCVSNSVLCLSD
FT GTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDDALESNPADLAAYKR
FT LGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIFGYNPGSGNAEVVANYLAACFS
FT VLNELRHDPASVELLYSWLVDPVLPQKISRE"
FT misc_feature 586. .788
FT /note="intergenic NCR"
FT CDS 789. .>1384
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ABO13898.1"
FT /translation="MNTVVGRRTINGRRRPRRQTRRIQRNQPVVVVQASRTTQRRPRRR
FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE
FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRKTFTASFING
FT VEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQF"
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SQ Sequence 1384 BP; 397 A; 347 C; 311 G; 329 T; 0 other;
ef079908 Length: 1384 06-MAR-2007 Type: N Check: 964 ..
1 agtgttgcgg actggatgct ccaagacgat atgatcgtcc gcaatagact
51 taccatcgac ctcaaccctg ttacagaaag attaagatcc tgttggttga
101 gatgtgtttc aaactcagtt ttgtgtctga gtgatggtac ccttttagcc
151 caaacccatc cgggcgttca gaaaagtggg agctacaata catctagctc
201 caactcccgg atcagagtta tggccgcctt tcatacaggt gctgcctggg
251 ctatggcgat gggcgatgat gccctcgagt ccaatcccgc tgacctagca
301 gcgtacaaaa gactaggatt caaggtagag gtttccggac aactggaatt
351 ttgctctcac atctttagag cgccggacct cgccctccct gtgaacgaaa
401 ataaaatgat ctacaaattg atctttggct acaacccagg gagcggaaac
451 gctgaggtag ttgcgaacta cttagccgct tgtttctcag ttctgaacga
501 gttgcggcac gatccagcgt ccgttgaact tctttactcg tggttagtcg
551 acccagtgct accacaaaag atatccaggg agtaaagaag cataccagtc
601 agcttacatt gaaattctaa agagttttct gcaacagtaa gagacttaag
651 taaaaccact caaagataca acggattaca aattcctagc aggtttcacc
701 gcaggcttcg tttcatcgat accaatatcc gtgatcagta tctatttcat
751 ctacctaaga atctctaaac acgtacgcga aatcgttaat gaatacggtc
801 gtgggtagaa gaacaatcaa tggaagaaga cgaccacgca ggcaaacaag
851 gcgcattcag cgaaatcagc cagtggttgt ggtccaagcc tctcggacaa
901 cacaacgccg acctagacga cgacgaagag gtaacaaccg gacaggaaga
951 actgttccta ccagaggagc aggttcaagc gagacatttg ttttctcaaa
1001 agacaatctc gcgggaagtt ccagcggagc aatcacgttc gggccgagtc
1051 tatcagactg cccggcattc tctaatggaa tactcaaggc ctaccatgag
1101 tataaaatct caatggtcat tctggagttc gtctccgaag cctcttccca
1151 aaattccggt tccatcgctt acgagctgga cccacactgt aaactcaatt
1201 cactctcctc aacgattaac aaattcggga tcacaaagcc cgggaggaaa
1251 acgtttacag cgtctttcat caacggggtc gaatggcatg acgttgccga
1301 ggaccaattc aggatcctct acaaaggcaa tggttcttca tcgatagctg
1351 gttctttccg aatcaccata aagtgccaat tcca