Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - [Tunisia], complete sequence.
ACC No: EF101929
Dated: 2008-01-08 | Length: 2781 | CRC: 1312522104
ID EF101929; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC EF101929;
XX
DT 04-DEC-2006 (Rel. 90, Created)
DT 08-JAN-2008 (Rel. 94, Last updated, Version 2)
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DE Tomato yellow leaf curl virus - [Tunisia], complete sequence.
XX
KW .
XX
OS Tomato yellow leaf curl virus - [Tunisia]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RX AGRICOLA; IND43899955.
RX DOI; 10.1111/j.1439-0434.2007.01224.x.
RA Gharsallah Chouchane S., Gorsane F., Nakhla M.K., Maxwell D.P.,
RA Marrakchi M., Fakhfakh H.;
RT "First Report of Tomato Yellow Leaf Curl Virus-Israel Species Infecting
RT Tomato, Pepper and Bean in Tunisia";
RL J. Phytopathol. 155(4):236-240(2007).
XX
RN [2]
RP 1-2781
RA Gharsallah Chouchane S., Gorsane F., Nakhla M.K., Maxwell D.P.,
RA Marrakchi M., Fakhfakh H.;
RT ;
RL Submitted (26-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL Biology, Faculty of Sciences of Tunis, Tunis 2092, Tunisia
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus - [Tunisia]"
FT /mol_type="genomic DNA"
FT /country="Tunisia:Sahel region"
FT /db_xref="taxon:413710"
FT gene 148. .498
FT /gene="V1"
FT CDS 148. .498
FT /codon_start=1
FT /gene="V1"
FT /product="pre-coat protein"
FT /db_xref="GOA:A1E2T1"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A1E2T1"
FT /protein_id="ABK96895.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT gene 308. .1084
FT /gene="CP"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:A1E2T2"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A1E2T2"
FT /protein_id="ABK96896.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="C3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A1E2T3"
FT /protein_id="ABK96897.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTEAHDIKYKCY"
FT gene complement(1226. .1633)
FT /gene="C2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /db_xref="GOA:A1E2T4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A1E2T4"
FT /protein_id="ABK96898.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="Rep"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="Rep"
FT /product="replication associated protein"
FT /db_xref="GOA:A1E2T5"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A1E2T5"
FT /protein_id="ABK96899.1"
FT /translation="MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVC
FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYNNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWSLKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="C4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A1E2T6"
FT /protein_id="ABK96900.1"
FT /translation="MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTENSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 756 A; 541 C; 606 G; 878 T; 0 other;
ef101929 Length: 2781 08-JAN-2008 Type: N Check: 2615 ..
1 accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttacac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtattttgtc ttgcaatatg
151 tgggaccctc ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac ccggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agccctgatg
501 ttccccgtgg atgtgaaggc ccatgtaaag tgcagtctta tgagcaacgg
551 gatgatatta agcataccgg tattgttcgt tgtgtcagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaacatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtc cgtgatagga ggccctatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gtgataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcct gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataacat ttatatttta
1101 tatcatgagc ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagact
1201 atctaaatac ttaagaactt catatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaata ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggccgctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcctga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agaccaattt
1651 ttcaaggata tgtttttttc ttcatctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacaca tcgttattgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt cttgcccgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcttcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaattctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggtttt tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggaattctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagataac aattgggata tgtcaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaatcgg tgtccctcaa agctctatgg
2651 caatcggtgt attggtgtct tacttatacc tggacaccta atggctatat
2701 ggtaatttca taaatgttta ttgcaattca aaattcaaac ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t