Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate TYLCV-Nob, complete genome.
ACC No: EF107520
Dated: 2006-12-12 | Length: 2784 | CRC: 37939603
ID EF107520; SV 1; circular; genomic DNA; STD; VRL; 2784 BP.
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AC EF107520;
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DT 12-DEC-2006 (Rel. 90, Created)
DT 12-DEC-2006 (Rel. 90, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate TYLCV-Nob, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2784
RA Abdallah N.A., Fauquet C.M., Beachy R.N., Madkour M.A.;
RT "Cloning and constructing infectious clones of an Egyptian isolate of
RT tomato yellow leaf curl virus";
RL Arab J. Biotechnol. 3(1):35-54(2000).
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RN [2]
RP 1-2784
RA Abdallah N.A., Fauquet C.M., Beachy R.N., Madkour M.A.;
RT ;
RL Submitted (07-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Genetics, Cairo University, 13 Gamaa St., Giza, Cairo 12613, Egypt
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FH Key Location/Qualifiers
FH
FT source 1. .2784
FT /organism="Tomato yellow leaf curl virus"
FT /isolate="TYLCV-Nob"
FT /mol_type="genomic DNA"
FT /country="Egypt:Nobaria"
FT /db_xref="taxon:10832"
FT gene 317. .667
FT /gene="v2"
FT CDS 317. .667
FT /codon_start=1
FT /gene="v2"
FT /product="pre-coat protein"
FT /protein_id="ABL60922.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYDANTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT SKAQNIQNVSKP"
FT gene 477. .1253
FT /gene="cp"
FT CDS 477. .1253
FT /codon_start=1
FT /gene="cp"
FT /product="coat protein"
FT /protein_id="ABL60923.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPTVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQVLVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1250. .1654)
FT /gene="c3"
FT CDS complement(1250. .1654)
FT /codon_start=1
FT /gene="c3"
FT /product="C3"
FT /protein_id="ABL60926.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLVNTINVTETHDIKYKFY"
FT gene complement(1395. .1802)
FT /gene="c2"
FT CDS complement(1395. .1802)
FT /codon_start=1
FT /gene="c2"
FT /product="C2"
FT /protein_id="ABL60925.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQSEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1711. .2784)
FT /gene="rep"
FT CDS complement(1711. .2784)
FT /codon_start=1
FT /gene="rep"
FT /product="Rep"
FT /protein_id="ABL60924.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2340. .2633)
FT /gene="c4"
FT CDS complement(2340. .2633)
FT /codon_start=1
FT /gene="c4"
FT /product="C4"
FT /protein_id="ABL60927.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
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SQ Sequence 2784 BP; 756 A; 538 C; 608 G; 882 T; 0 other;
ef107520 Length: 2784 12-DEC-2006 Type: N Check: 5006 ..
1 gttgaaatga atcggtgtcc ctcaaagctc tatggcaact cggtgtatcg
51 gtgtcttact tataccttgg acacctaatg gctatttggt aatttcataa
101 atgttcattg caattcaaaa ttcaaaattc aaaaatcaaa tcattaaagc
151 ggccatccgt ataatatttc cggatggccg cgccttttcc ttttatgtgg
201 tccccagtga aaattccaca gacgtcactg tcaaccaatc aaattgcatc
251 ctcaaacgtt agataagtgt tcatttgtct ttatatactt ggtccccaag
301 tattttgtct tgcaatatgt gggacccact tctaaatgaa tttcctgaat
351 ctgttcacgg atttcgttgt atgttagcta ttaaatattt gcagtccgtt
401 gaggaaactt acgacgccaa tacattgggc cacgatttaa ttagggatct
451 tatatctgtt gtaagggccc gtgactatgt cgaagcgacc aggcgatata
501 atcatttcca cgcccgtctc gaaggttcgc cgaaggctga acttcgacag
551 cccatacagc agccgtgctg ctgtccccac tgtccaaggc acaaacaagc
601 gacgatcatg gacgtacagg cccatgtatc gaaagcccag aatatacaga
651 atgtatcgaa gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt
701 ccagtcttat gagcaacggg atgatattaa gcatactggt attgttcgtt
751 gtgttagtga tgttactcgt ggatctggaa ttactcacag agtgggtaag
801 aggttctgtg ttaaatcgat atatttttta ggtaaagtct ggatggatga
851 aaatatcaag aagcagaatc acactaatca ggtcatgttc ttcttggtcc
901 gtgatagaag gccctatgga agcagcccaa tggattttgg gcaggttttt
951 aatatgttcg ataatgagcc cagtaccgca accgtgaaga acgatttgcg
1001 ggataggttt caagtgatga ggaaatttca tgctacagtt attggtgggc
1051 cctctggaat gaaggaacag gtcttagtta agagattttt taaaattaac
1101 agtcatgtaa cttataatca tcaggaggca gccaagtacg agaaccatac
1151 tgaaaacgcc ttgttattgt atatggcatg tacgcatgcc tctaatccag
1201 tgtatgcaac tatgaaaata cgcatctatt tttatgattc aatatcaaat
1251 taataaaatt tatattttat atcatgagtt tctgttacat ttattgtgtt
1301 tacaagtaca tcgtacaata catgatcaac tgctctgatt acattgttaa
1351 tggaaattac accaagacta tctaaatatt taagaacttc atatctaaat
1401 actcttaaga aacgaccagt ctgaggctgt aatgtcgtcc aaattcggaa
1451 gttgagaaaa catttgtgaa tccccattac cttcctgatg ttgtggttga
1501 atcttatctg aatggaaatg atgtcgtggt tcattagaaa tggcctctga
1551 ctgtgttctg ttatcttgaa atagagggga ttgtttatct cccagataaa
1601 aacgccattc tctgcctgag gagcagtgat gagttcccct gtgcgtgaat
1651 ccatgattgt tgcagttgag gtggaggtag tatgagcagc cacagtctag
1701 gtctacacgc ttacgcctta ttggtttctt cttggctatc ttgtgttgga
1751 ccttgattga tacttgcgaa cagtggctcg tagagggtga cgaaggttgc
1801 attcttgaga gcccaatttt tcaaggatat gtttttttct tcgtctagat
1851 attccctata tgaggaggta ggtcctggat tgcagaggaa gatagtggga
1901 attccccctt taatttgaat gggcttcccg tattttgtgt tgctttgcca
1951 gtccctctgg gcccccatga attccttgaa gtgctttaaa taatgcgggt
2001 ctacgtcatc aatgacgttg taccacgcat cattactgta cacctttggg
2051 cttaggtcta gatgtccaca taaataatta tgtgggccta gagacctggc
2101 ccacattgtt ttgcctgttc tactatcacc ctcaatgaca atgcttatgg
2151 gtctccatgg ccgcgcagcg gaagacacga cgttctcggc gacccactct
2201 tcaagttcat ctggaacttg attaaaagaa gaagaaagaa atggagaaac
2251 ataaacttct aaaggaggac taaaaatcct atctaaattt gaacttaaat
2301 tatgaaattg taaaatatag tcctttgggg ccttctcttt taatatattg
2351 agggcctcgg atttactgcc tgaattgagt gcttcggcat atgcgtcgtt
2401 ggcagattgc tgacctcctc tagctgatct gccatcgatt tggaaaactc
2451 caaaatcaat gaagtctccg tctttctcca cgtaggtctt gacatctgtt
2501 gagctcttag ctgcctgaat gtttggatgg aaatgtgctg acctgtttgg
2551 ggataccagg tcgaagaacc gttggttctt acattggtat ttgccttcga
2601 attggataag cacatggaga tgtggttccc cattctcgtg gagttctctg
2651 caaactttga tgtatttttt atttgttggg gtttctaggt tttttaattg
2701 ggaaagtgct tcctctttag agagagaaca attgggatat gttaggaaat
2751 aattcttggc atatatttta aataaacgag gcat