Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus from USA, complete genome.
ACC No: EF110890
Dated: 2007-05-17 | Length: 2752 | CRC: 1407631371
ID EF110890; SV 1; circular; genomic DNA; STD; VRL; 2752 BP.
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AC EF110890;
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DT 17-MAY-2007 (Rel. 91, Created)
DT 17-MAY-2007 (Rel. 91, Last updated, Version 1)
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DE Tomato yellow leaf curl virus from USA, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2752
RA Isakeit T., Idris A., Sunter G., Black M.C., Brown J.;
RT "Tomato yellow leaf curl virus in Tomato in Texas, Originating from
RT Transplant Facilities";
RL Plant Dis. 91:466-466(2007).
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RN [2]
RP 1-2752
RA Idris A., Brown J.;
RT ;
RL Submitted (09-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2752
FT /organism="Tomato yellow leaf curl virus"
FT /chromosome="DNA-A"
FT /specific_host="Lycopersicon esculentum"
FT /mol_type="genomic DNA"
FT /country="USA:Texas"
FT /db_xref="taxon:10832"
FT CDS 148. .498
FT /codon_start=1
FT /product="V2"
FT /protein_id="ABQ42707.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKS"
FT CDS 308. .1084
FT /codon_start=1
FT /product="coat protein"
FT /note="V1"
FT /protein_id="ABQ42708.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDIPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /product="C3"
FT /protein_id="ABO31306.1"
FT /translation="MDSRTGELITAPQAKNGVFIWEINNPLYFKITDHSPRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /product="C2"
FT /protein_id="ABO31305.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGKEWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /product="rep-associated protein"
FT /note="C1"
FT /protein_id="ABO31304.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC
FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
XX
SQ Sequence 2752 BP; 751 A; 526 C; 599 G; 876 T; 0 other;
ef110890 Length: 2752 17-MAY-2007 Type: N Check: 7331 ..
1 accggatgac cgcgcctttt ccttttatgt ggtccccacg agggttacac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtattttgtc ttgcaatatg
151 tgggacccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag caaccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agtcctgata
501 ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcagcgg
551 gatgatatta agcacactgg tgttgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtcggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt ctttttggtc cgtgatagaa ggccctatgg
751 aagcagtcca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtactgc aactgtgaag aatgatttgc gtgataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtac gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcca ctgctctgat tacattgtta atggaaatta caccaagact
1201 atctaaatac ttaagaactt catatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccatta ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctcgg gctgtggtct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctttgcctga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga
1501 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagttgg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattctttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccatgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagacacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc gatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttttctt ttagtatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcttcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgtttggatg gaaatgtgct gatctgtttg gggataccaa gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt gaaattctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctatg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaatcgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tatttatacc tcgacaccta atggcaattc
2701 aaaattcaaa attcaaaaat caaattatta aagcggtcat ccgtataata
2751 tt