Sequence of DPV Tomato leaf curl Sudan virus
Tomato leaf curl Sudan virus from Yemen, complete genome.
ACC No: EF110891
Dated: 2007-12-02 | Length: 2781 | CRC: 264904359
ID EF110891; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC EF110891;
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DT 02-DEC-2007 (Rel. 94, Created)
DT 02-DEC-2007 (Rel. 94, Last updated, Version 1)
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DE Tomato leaf curl Sudan virus from Yemen, complete genome.
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KW .
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OS Tomato leaf curl Sudan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Isakeit T., Idris A., Brown J.;
RT "Tomato yellow leaf curl virus in tomato (Lycopersicon esculentum) in
RT Texas, originating from transplant facilities";
RL Unpublished.
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RN [2]
RP 1-2781
RA Idris A., Brown J.;
RT ;
RL Submitted (09-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato leaf curl Sudan virus"
FT /chromosome="DNA-A"
FT /mol_type="genomic DNA"
FT /country="Yemen"
FT /db_xref="taxon:270146"
FT CDS 151. .501
FT /codon_start=1
FT /product="V2"
FT /protein_id="ABQ42709.1"
FT /translation="MWDPLINEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL
FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASIMDVQAHV
FT PKAQNIQNVSNP"
FT CDS 311. .1084
FT /codon_start=1
FT /product="coat protein"
FT /note="V1"
FT /protein_id="ABQ42710.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW
FT TYRPMYRKPKIYRMYRTPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH
FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE
FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKVYNHIVYNHQEQGKYEN
FT HTENALLLYMACTHASNPVYATLKIRVYFYDSISN"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /product="C3"
FT /protein_id="ABO31312.1"
FT /translation="MDSRTGEPITAHQAQSGVFIWEIKNPLYFKITDHSQRPFLMNHDI
FT ISMQIRFNHNIRKELGIHKCFLNFQIWTNLQPQTGRFLRVVRYQVLKYLDNLGVISINN
FT VIRAVHHVLYNVIAKTIDVTENHDIKYKIY"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /product="C2"
FT /protein_id="ABO31311.1"
FT /translation="MRHSSPSPSRCSQVPIKVQHRTAKTKTVRRKRIDLNCGCSYYLHL
FT NCINHGFTHRGTHHCSSSPEWRFYLGDKKSPVFQDNRPQSEAISNEPRHHFNANKIQSQ
FT HQEGTGDSQMFSELPNLDELTASDWSFLKSS"
FT CDS complement(1542. .2621)
FT /codon_start=1
FT /product="rep-associated protein"
FT /note="C1"
FT /protein_id="ABO31310.1"
FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLKNINTPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLDWGEFQIDGRSARGGQQSANDAYAAAINSGSKSEALRVLRELAPRDYILQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMPSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEERNISLKNWALKNATFVTLSEPL
FT FSSANQGPTPNGEDEDSQT"
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SQ Sequence 2781 BP; 740 A; 556 C; 603 G; 882 T; 0 other;
ef110891 Length: 2781 02-DEC-2007 Type: N Check: 7885 ..
1 accggatggc ccgcgcccct gcttttatgt ggtccccatc acgtgggttc
51 cacacatgtc gctatcatcc aatgaaattc aagcctgaaa cgttaattaa
101 ttgtcctttt gtctttatat acttggtccc caagtagttt ctcttgcaat
151 atgtgggacc ctctgattaa cgagtttcct gaatcagttc acggatttcg
201 ttgtatgcta gccataaaat atttgcaggc cgttgagcaa acatacgagc
251 ccaatactct gggccacgat ttaattaggg atcttatttc tgttataagg
301 gcccgtgact atgtcgaagc gtcccggcga tataatcatt tccacgcccg
351 tctcgaaggt tcgccgaagg ctgaacttcg acagcccata cagcagccgt
401 gctgctgccc ccattgtcca aggcacaaac aagcgtcgat catggacgta
451 caggcccatg taccgaaagc ccaaaatata cagaatgtat cgaacccctg
501 atgttccccg tggatgtgaa ggcccttgta aggtccaatc gtttgacaag
551 cgccatgatt tgaagcatac gggtgaggta ttgtgtgttt cagatgtaac
601 acgtggtaat ggccttactc atcgtgttgg gaaacgtttt tgtatcaagt
651 ctatttacat tgtgggcaaa gtgtggatgg atgagaacat taaggttaag
701 aatcatacta acacttgtat gttctggctt gttcgggatc gtcgtccagt
751 taccactcca tatggatttg gggagttgtt taatatgtat gataatgagc
801 catctacagc gactattaag aatgatttgc gggatcgttg tcaggttctc
851 aagaggttta ctgctagtct gagtggtggt caatatgcct ctaaagagca
901 atgtgtgatt aggcgatttt ataaggttta taatcatatt gtgtataacc
951 atcaagagca agggaagtat gagaatcata ctgagaacgc tctattattg
1001 tatatggcat gtactcatgc ttctaatcca gtgtatgcta cacttaaaat
1051 aagggtgtat ttctatgatt caatatcaaa ttaataaatt ttatatttta
1101 tatcatgatt ttctgttaca tctattgtct ttgcaattac attatacaat
1151 acatgatgaa ctgctctaat tacattgtta atggaaatta cacccaaatt
1201 atctaaatat ttaagaacct gatacctaac tactcttaag aaacgaccag
1251 tctgaggctg taagttcgtc cagatttgga agttcagaaa acatttgtga
1301 atccccagtt ccttcctgat gttgtgattg aatcttattt gcattgaaat
1351 gatgtcgtgg ttcattagaa atggcctctg actgtggtct gttatcttga
1401 aatacagggg attttttatc tcccagataa aaacgccact ctgggcttga
1451 tgagcagtga tgggttcccc ggtgcgtgaa tccatggttg atgcagttga
1501 ggtggagata gtacgagcac ccgcaattta ggtcaatgcg cttacgtctg
1551 actgtcttcg tcttcgccgt tcggtgttgg accttgattg gcacttgaga
1601 acaacggctc ggagagggtg acgaatgtcg cattctttag agcccaattt
1651 ttcagagata tgtttctttc ttcatccaga tattctctat atgaggaggt
1701 aggtcctgga ttgcatagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc atactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttaa agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccatgca ttattactgt aaacttttgg actcaggtcc agatgtccac
1901 acaaataatt gtgtggtcct agagacctgg cccacattgt tttgccggtt
1951 ctactatcac cctcgatgac aatactatta ggtctccatg gccgcgcagc
2001 ggaaggcatg acgttctccg acacccaaac ctcaagttcc tctggaactt
2051 gattaaaaga agaagataga aaaggagaaa tatacggagc cggaggctcc
2101 tgaaaaatcc tatctaaatt actatttaaa ttatgaaatt gtaaaatata
2151 atctctggga gctaattccc taagtactct aagagcctct gacttactgc
2201 ctgagttaat tgctgcggcg taagcatcgt ttgcagattg ttgaccccct
2251 cttgcagacc ttccatcgat ctgaaactct ccccagtcga gagtgtctcc
2301 gtccttatcg atgtaggact tgacgtcgga acttgattta gctccctgaa
2351 tgtttggatg gaaatgtgct gccctgcttg gggataccag gtcgaagaat
2401 cgctgatttt ggcacttgaa tttgccttcg aactgtataa gcacatggag
2451 atgtggctcc ccattctcgt gaagttctct gcaaactttg atatattttt
2501 tatttgttgg ggtatttatg ttttttaatt gggaaagtgc ctcttctttt
2551 gttaaggagc attgaggata tgtaaggaaa taatttttgc aatttatttg
2601 aaaacgcttg ggaggagcca tatggtcaat gagtaccgat tgaccaagat
2651 ttcatttatc ccttgtatat cggtactcaa tatatagtga gtaccaaatg
2701 gcatattggt aattatgtaa aggtacattt attttcaaaa tttaaaattg
2751 aaattcataa agcggccatc cgtataatat t