Sequence of DPV Tomato ringspot virus

Tomato ringspot virus isolate N-1 coat protein gene, partial cds.

ACC No: EF370401

Dated: 2007-02-14 | Length: 1689 | CRC: 1566729672

                
ID   EF370401; SV 1; linear; genomic RNA; STD; VRL; 1689 BP.
XX
AC   EF370401;
XX
DT   14-FEB-2007 (Rel. 90, Created)
DT   14-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Tomato ringspot virus isolate N-1 coat protein gene, partial cds.
XX
KW   .
XX
OS   Tomato ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup C.
XX
RN   [1]
RP   1-1689
RA   Pinkerton J.N., Kraus J.E., Martin R.R., Schreiner R.P.;
RT   "Epidemiology of Xiphinema americanum and Tomato Ringspot Virus on red
RT   raspberry, Rubus idaeus";
RL   Unpublished.
XX
RN   [2]
RP   1-1689
RA   Kraus J.E., Pinkerton J.N., Martin R.R.;
RT   ;
RL   Submitted (17-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   USDA/ARS, Horticultural Crops Research Laboratory, 3420 NW Orchard Ave.,
RL   Corvallis, OR 97330-5098, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1689
FT                   /organism="Tomato ringspot virus"
FT                   /specific_host="Rubus idaeus"
FT                   /isolate="N-1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Clark County, WA"
FT                   /db_xref="taxon:12280"
FT   CDS             <1. .1689
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ABN45884.1"
FT                   /translation="GGSWQEGTEAAFLGKVTCAKDAKGGTLLHTLDIIKECKSQNLLRY
FT                   KEWQRQGFLHGKLRLRCFIPTNIFCGHSMMCSLDAFDRYDSNVLGASFPVKLASLLPTE
FT                   VISLADGPVVTWTFDIGRLCGHGLYYSEGAYARPKIYFLILSDNDVPAEADWQFTYQLL
FT                   FEDHTFSNSFGAVPFITLPHVFNRLDIGYWRGPTEIDLTSTPAPNAYRLLFGLSTVISG
FT                   NMSTLNANQALLRFFQGSNGTLHGRIKKIGTALTTCSLLLSLRYKDASLTLETAYQRPH
FT                   YILADGQGAFSLPISTPHAATSFLEDVLRLEIFAIAGPFSPKDNKAKYQFMCYFDHIEL
FT                   VEGVPRTIAGEQQFNWCSFKNFKIDDWRFEWPARLPDILDDKSEVLLRQHPLSLLISST
FT                   GFFTGRAIFVFQWGLNTAAGNMKGSFSARLAFGKGVEEIEQTSTVQPLVGACEARIPVE
FT                   FKTYTGYTTSGPPGSMEPYIYVRLTQAKLVDRLSVNVILQEGFSFYGPSVKHFKKEVGT
FT                   PSATLGTNNPVGRPPENVDTGGPGGQYAAALQAAQQAGKNPFGRG"
XX
SQ   Sequence 1689 BP; 416 A; 355 C; 405 G; 513 T; 0 other;

ef370401 Length: 1689  14-FEB-2007  Type: N  Check: 5181  ..

       1  ggcgggtcct ggcaagaagg tactgaagcc gcttttttag gcaaagttac
      51  ctgtgcgaag gacgccaagg gtggaacttt attgcacact ttggatatta
     101  taaaagagtg caaatcccaa aatttattaa ggtataaaga atggcaacgt
     151  caaggctttc ttcatggaaa gcttagattg cgctgcttca tacccactaa
     201  cattttttgt gggcattcca tgatgtgttc cttggatgcg tttgatcgtt
     251  atgattcgaa cgtgctaggt gctagttttc cagtgaagtt ggcaagttta
     301  ttgccaacgg aggtgattag tctagctgat ggacccgtgg tcacgtggac
     351  gtttgatatt ggacgtctgt gtggtcatgg tctctattat tctgagggcg
     401  cttatgcgag gcccaaaatt tactttttaa ttctttccga taatgatgtt
     451  cctgcagaag cagattggca atttacctat cagcttttgt ttgaggatca
     501  tacattttcg aattcctttg gggcggttcc ttttattacc ttaccccatg
     551  tatttaatag attagatata ggctattggc gcgggccaac agagatagat
     601  ttaacatcaa ctcccgcacc aaacgcctat cgtttacttt ttggcttgtc
     651  cactgttatt agtggtaaca tgtcaacttt gaatgccaat caagccctat
     701  tgcgtttttt ccagggctcg aatggcactt tacatgggcg cattaaaaag
     751  atagggacag cacttacaac ctgttccctt ttactatcgt tgcgctacaa
     801  agatgcgagt ctcacattgg agaccgcata tcaaaggccc cattacattt
     851  tggctgacgg gcaaggggct ttttcactac caatttctac cccccatgca
     901  gcaacctcct ttttagagga cgtgttgcgt ctggagattt ttgctattgc
     951  tgggcctttt agtcccaaag ataataaagc aaaataccaa ttcatgtgtt
    1001  atttcgatca catagaactg gttgaggggg tacctagaac tatagcgggc
    1051  gaacagcagt tcaactggtg tagttttaaa aatttcaaaa tcgatgactg
    1101  gaggtttgag tggccggctc gccttccaga tatacttgat gataagtcag
    1151  aagtgctttt gaggcaacat cctttatctc tgcttatctc atctaccggt
    1201  ttttttacgg gtagagccat ttttgttttc cagtggggtt tgaatactgc
    1251  tgctgggaat atgaaaggct cattttctgc gcgcctggcc tttggcaagg
    1301  gcgttgagga aattgagcaa acgtcaacag tgcaaccact tgttggcgct
    1351  tgtgaagctc gtatacccgt ggagtttaag acttacacgg gttatactac
    1401  ttcgggtcct cctggatcca tggaaccata catttacgtg aggcttacgc
    1451  aagctaagct tgtggatagg ctttctgtga atgttatttt acaggaggga
    1501  ttttctttct atggacctag cgtcaaacat ttcaagaaag aagtcggcac
    1551  gcctagtgcc accctaggga caaataaccc cgttgggcgc ccacctgaga
    1601  atgtcgatac agggggtcct ggcggccagt atgcagctgc cttacaagca
    1651  gctcagcaag ctgggaaaaa tcctttcggg cgtggttga