Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate PAV on13-5 RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.
ACC No: EF408157
Dated: 2008-12-29 | Length: 789 | CRC: -1079576193
ID EF408157; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
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AC EF408157;
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DT 31-OCT-2008 (Rel. 97, Created)
DT 29-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE Barley yellow dwarf virus-PAV isolate PAV on13-5 RNA-dependent RNA
DE polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE movement protein P4 gene, complete cds.
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KW .
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OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-789
RA Delmiglio C., Pearson M.N.;
RT "Sequence variation of barley yellow dwarf viruses from New Zealand
RT grasses";
RL Unpublished.
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RN [2]
RP 1-789
RA Delmiglio C., Pearson M.N.;
RT ;
RL Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL Private Bag 92019, Auckland 1142, New Zealand
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FH Key Location/Qualifiers
FH
FT source 1. .789
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="Microlaena stipoides"
FT /isolate="PAV on13-5"
FT /mol_type="genomic RNA"
FT /country="New Zealand:Coromandel"
FT /note="serogroup: PAV"
FT /db_xref="taxon:12040"
FT CDS <1. .80
FT /codon_start=3
FT /product="RNA-dependent RNA polymerase P2 fusion protein"
FT /protein_id="ABR26463.1"
FT /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 194. .>789
FT /codon_start=1
FT /product="coat protein P3"
FT /note="ORF3; translated from subgenomic RNA1"
FT /protein_id="ABR26464.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGLRRRNGRR
FT KGRGGANPVFRPTGGAEVFVFSVDNLKANSTGTIKFGPSLSQCPALSDGILKSYHRYKI
FT TSVRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTADTAGQFIITMSVSLMTA"
FT CDS 237. .698
FT /codon_start=1
FT /product="movement protein P4"
FT /note="ORF4; translated via leaky scanning of subgenomic
FT RNA1"
FT /protein_id="ABR26465.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDSDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWLATLIPSQSAGPRQRSSEPKRLTGRNSRNQR"
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SQ Sequence 789 BP; 237 A; 192 C; 186 G; 174 T; 0 other;
ef408157 Length: 789 29-DEC-2008 Type: N Check: 1003 ..
1 agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata
51 ccggaaaacc actcacaaaa cgaatattaa ttatcaaatc ttagctgggt
101 ttggaatagg gtttatagtt agtataccct gtacattagc tctcacgtac
151 tttatttaca ataaagtttc agacaccact agagaggtgg tgaatgaatt
201 cagtaggccg tagaggacct agacgcgcaa atcaaaatgg cacaagaagg
251 aggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc
301 aggactcaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc
351 ctgtatttag accaacaggc ggggctgagg tattcgtatt ctcagtcgac
401 aaccttaaag ccaactctac cgggacaatc aaattcggcc ccagtctatc
451 gcaatgccca gcgctttcag acggaatact taagtcctac caccgttaca
501 agatcacaag tgtccgtgtt gagtttaagt cacacgcgtc cgcaactacg
551 gccggcgcta tctttattga actcgacacc gcgtgcaaac aatcagccct
601 ggctagctac attaattcct tcacaatcag caggaccgcg tcaaaggtct
651 tcagagccga agcgattaac gggaaggaat tccaggaatc aacgatagac
701 cagttctgga tgctctacaa ggccaatgga accaccgctg acacggcagg
751 acaattcatt atcacgatga gtgtcagttt gatgacggc