Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PepMV-SW RNA-dependent RNA polymerase (RdRP) gene, partial cds; TGBp1 (TGB1), TGBp2 (TGB2), and TGBp3 (TGB3) genes, complete cds; and coat protein (cp) gene, partial cds.
ACC No: EF408822
Dated: 2009-01-16 | Length: 2447 | CRC: -837806533
ID EF408822; SV 1; linear; genomic RNA; STD; VRL; 2447 BP.
XX
AC EF408822;
XX
DT 21-FEB-2007 (Rel. 90, Created)
DT 16-JAN-2009 (Rel. 99, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate PepMV-SW RNA-dependent RNA polymerase (RdRP)
DE gene, partial cds; TGBp1 (TGB1), TGBp2 (TGB2), and TGBp3 (TGB3) genes,
DE complete cds; and coat protein (cp) gene, partial cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-2447
RA Hasiow B., Borodynko N., Pospieszny H.;
RT "Characterization of two distinct Polish isolates of Pepino mosaic virus";
RL Eur. J. Plant Pathol. 122(3):443-445(2008).
XX
RN [2]
RP 1-2447
RA Hasiow B., Borodynko N., Pospieszny H.;
RT ;
RL Submitted (30-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL Virology and Bacteriology, Institute of Plant Protection, Miczurina 20,
RL Poznan 60-318, Poland
XX
FH Key Location/Qualifiers
FH
FT source 1. .2447
FT /organism="Pepino mosaic virus"
FT /isolate="PepMV-SW"
FT /mol_type="genomic RNA"
FT /isolation_source="infected leaves"
FT /db_xref="taxon:112229"
FT gene <1. .510
FT /gene="RdRP"
FT CDS <1. .510
FT /codon_start=1
FT /gene="RdRP"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:A3FMJ6"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A3FMJ6"
FT /protein_id="ABN58684.1"
FT /translation="MRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGV
FT VQEKPSFKKLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEA
FT IGNLHTAARSYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKS
FT PPKATH"
FT gene 536. .1240
FT /gene="TGB1"
FT CDS 536. .1240
FT /codon_start=1
FT /gene="TGB1"
FT /product="TGBp1"
FT /note="triple gene block 1 protein"
FT /db_xref="GOA:A3FMJ7"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:A3FMJ7"
FT /protein_id="ABN58685.1"
FT /translation="MERSTLINLLQLHHFELKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT gene 1221. .1592
FT /gene="TGB2"
FT CDS 1221. .1592
FT /codon_start=1
FT /gene="TGB2"
FT /product="TGBp2"
FT /note="triple gene block 2 protein"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT /protein_id="ABN58686.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT gene 1444. .1698
FT /gene="TGB3"
FT CDS 1444. .1698
FT /codon_start=1
FT /gene="TGB3"
FT /product="TGBp3"
FT /note="triple gene block 3 protein"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q8B083"
FT /protein_id="ABN58687.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT gene 1737. .>2447
FT /gene="cp"
FT CDS 1737. .>2447
FT /codon_start=1
FT /gene="cp"
FT /product="coat protein"
FT /note="CP"
FT /db_xref="GOA:A3FMK0"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:A3FMK0"
FT /protein_id="ABN58688.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2447 BP; 736 A; 590 C; 452 G; 669 T; 0 other;
ef408822 Length: 2447 16-JAN-2009 Type: N Check: 9896 ..
1 atgaggttgt ctggtgaagg tccaactttt gatgccaaca cagaatgttc
51 aatagcatat actgctacaa gataccatct tgattctaca gtcaagcagg
101 tttatgctgg agatgatatg gcattagatg gagttgtcca agaaaaaccc
151 tcttttaaaa aactacagaa caagcttaaa ctcacctcaa agacactatt
201 tccaaaacag gttaaaggtg attatgctga attctgtggt tggactttca
251 ctcctggtgg tatcattaaa aaccctttga aaatgcatgc ttccattatg
301 ttgcaagagg caatcggcaa tttacacact gctgccagat catacgccat
351 tgacatgaag cattcatacc aaatgggtga tgagctgcac aattacttaa
401 caccagatga agctgaacaa cacttccttg ctgttcggaa gttgcacaag
451 ttacaccaag gagaagcaat gagacttggt gaaaagagcc ctccaaaagc
501 aacacattga ggggttaagt tttccccagt tcgaaatgga aagatcaact
551 ctgattaatt tacttcaatt gcaccacttc gagctaaaac tcagtgttga
601 aggaatcata gttgtgcacg gaattgcagg cactgggaaa accactttac
651 ttaggacttt attttctgct taccctagct tagttatagg ttcacctagg
701 ccttgctatt tagataaaca aaacaaaatt tcacaagttt gcttatcttg
751 ctttcccaat actcattgtg atattgtcga tgagtatcat ttgctagaaa
801 gttttccaga accaaaattg gctatctttg gtgacccctg tcaatgcaca
851 tacattgaga gacttagagt cccacattac acttccttca gaactcatag
901 atttggaaag tcaactgctg agattttaaa caaactgttt gaccttaata
951 tagtctcagt taagaaagaa gacgacatcg ttgaattctt taaccctttt
1001 gaagttgacc ccactgagca tatctctgcc tctgaagaag aagtcttgga
1051 ctttgtttct gaccaagtgg tgaccactag ctcagaggaa ctagcaggac
1101 ttgagtttgc agaaacaact ttctactgca caacattggc cgcagctgtt
1151 gctgaaaatc ctgctaagac tttcatctct ctgactagac acacccacaa
1201 actcaccatt ggggaactaa atgccaggtc taactcctag agctgacctc
1251 actgacacat acaaaatcat tgccattgct ttcttgttgt cagcttgcat
1301 ttacttccaa aatagccact accaacctgt tgctggagac aacttgcacc
1351 gtttgccttt tggtggccaa tatcaagacg gcaccaaaaa gatatcttat
1401 tttccacaac agcagtcata ctttcattct ggaaacaaat taaatgtcct
1451 catacttatc ttcattctca cattgggtat tgtcctcacc aataaattta
1501 gttttagctt tagtcgtact actcaccagc attcttgcta taacacacat
1551 tcagcaacca acaatacaca accattgtca ggtcatcatt gacggtgctg
1601 caatagtcat aacaaattgt gagaacacac cagaagtgct taaagcaatc
1651 aacttctccc cttggaacgg gttaagtttt cctaaatttg aaaattaata
1701 ttgagtgttc acaaaaatca acttcaataa acaatcatgc ctgacacaac
1751 acctgttgct gccacttcaa gtgcaccacc cacagccaaa gatgctggtg
1801 ccaaagctcc ttctgacttc tcaaatccca atacagctcc tagtctcagt
1851 gatttgaaga aagtcaagta tgtctccacc gtgacctccg tggccacacc
1901 agctgaaatt gaagccctag gcaaaatctt caccgctatg ggccttgccg
1951 ccaatgagac tggtccggcc atgtgggatc tagctcgtgc atatgctgat
2001 gtgcagagtt ctaaatcggc acagctgatt ggagctaccc cttccaaccc
2051 tgcactatca cgccgagccc ttgctgctca gtttgatcga atcaatataa
2101 cccccaggca attttgcatg tactttgcca aagttgtttg gaacatactt
2151 ctcgacagca acattccacc agcaaattgg gccaaacttg gttaccaaga
2201 agatacaaaa tttgctgcat ttgacttctt cgatggagtc accaaccctg
2251 ccagcctgca gcctgctgat ggtcttatca ggcagccaaa tgagaaagaa
2301 ctagctgctc actccgtagc taagtacggc gccttggcta ggcaaaagat
2351 ctccacaggt aattatatta ccacacttgg agaagtcaca cgtggacaca
2401 tgggaggagc taacaccatg tacgcgatag acgcaccccc tgaactt