Sequence of DPV Tomato yellow vein streak virus
Tomato yellow vein streak virus isolate Ba-3 segment DNA-A, complete sequence.
ACC No: EF417915
Dated: 2010-01-01 | Length: 2561 | CRC: -224485618
ID EF417915; SV 1; circular; genomic DNA; STD; VRL; 2561 BP.
XX
AC EF417915;
XX
DT 03-MAR-2007 (Rel. 90, Created)
DT 01-JAN-2010 (Rel. 103, Last updated, Version 2)
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DE Tomato yellow vein streak virus isolate Ba-3 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato yellow vein streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2561
RA Ribeiro S.G., Inoue-Nagata A.K., Daniels J., Avila A.C.;
RT "Potato deforming mosaic disease is caused by an isolate of Tomato yellow
RT vein streak virus";
RL Plant Pathol. 55:569-569(2006).
XX
RN [2]
RC Publication Status: Available-Online prior to print
RP 1-2561
RX PUBMED; 19937269.
RA Albuquerque L.C., Martin D.P., Avila A.C., Inoue-Nagata A.K.;
RT "Characterization of tomato yellow vein streak virus, a begomovirus from
RT Brazil";
RL Virus Genes 0:0-0(2009).
XX
RN [3]
RP 1-2561
RA Albuquerque L.C., Fernandes-Carrijo F.R., Avila A.C., Ribeiro S.G.,
RA Inoue-Nagata A.K.;
RT ;
RL Submitted (01-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL Virology, Embrapa Vegetables, Km 09, BR060, Cx. Postal 218, Brasilia, DF
RL 70359-970, Brazil
XX
FH Key Location/Qualifiers
FH
FT source 1. .2561
FT /organism="Tomato yellow vein streak virus"
FT /segment="DNA-A"
FT /host="potato"
FT /lab_host="tomato"
FT /isolate="Ba-3"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collected_by="Julio Daniels"
FT /collection_date="1983"
FT /db_xref="taxon:55216"
FT gene 156. .899
FT /gene="CP"
FT CDS 156. .899
FT /codon_start=1
FT /gene="CP"
FT /product="AV1"
FT /db_xref="GOA:A3RJ06"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A3RJ06"
FT /protein_id="ABN80220.1"
FT /translation="MPKRDAPWRIMAGTTKVSRSSNYSPRGGISKRDAWVNRPMYRKPR
FT IYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDITRGNCITHRVGKRFCVKS
FT VYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDL
FT RDRFQVMHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYM
FT ACTHASNPLYATLKIRIYFYDSITN"
FT gene complement(896. .1294)
FT /gene="REn"
FT CDS complement(896. .1294)
FT /codon_start=1
FT /gene="REn"
FT /product="AC3"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A3RJ07"
FT /protein_id="ABN80223.1"
FT /translation="MDSRTGELITAPQAANGVFIWEITNPLYFKIINVEDPLYTTTRIY
FT HLQIRFNHNLRKALDLHKAFLNFQVWTTSLRASGMTYLSRFKYLVLLYLNQLGVISVNN
FT VIRAVRFATDKSYVNYVLENHSIKFRLY"
FT gene complement(1041. .1430)
FT /gene="TrAP"
FT CDS complement(1041. .1430)
FT /codon_start=1
FT /gene="TrAP"
FT /product="AC2"
FT /db_xref="GOA:A3RJ08"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A3RJ08"
FT /protein_id="ABN80222.1"
FT /translation="MLNTSSSTPPSIKPRHRAAKRKVIRRRRIDLNCGCSIYIHLNCRN
FT NGFTHRGTHHCASSSEWRLYLGDYQSPLFQDNQRRGPPLHNDTDIPSTDTFQPQPAESV
FT GSPQGFSQFPSLDDIPESFWDDIFK"
FT gene complement(1342. .2427)
FT /gene="Rep"
FT CDS complement(1342. .2427)
FT /codon_start=1
FT /gene="Rep"
FT /product="AC1"
FT /db_xref="GOA:A3RJ09"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A3RJ09"
FT /protein_id="ABN80221.1"
FT /translation="MPLPKRFLVNAKNFFLTYPHCSLTKDEALSQLQALQTPTNKKFIR
FT VTRELHEDGEPHLHVLIQFEGKFKCHNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDFIDFGTFQIDGRSARGGCQSANDTYAKVLNADNPTTALNILKEEQPRDYVLHLD
FT KIRTHVQRIFAKAPEPWVSPFQLSSFTNVPDEMQEWADEYFGRGAAARPERPISIIIEG
FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVHYNVIDDVTPQYLKLKHWKELIGAQ
FT RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENISLKTWTLHNAKYIFLN
FT SPLYQTTTQSSQTEGNSPKTH"
FT gene complement(1977. .2270)
FT /gene="AC4"
FT CDS complement(1977. .2270)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A3RJ10"
FT /protein_id="ABN80224.1"
FT /translation="MGNLISTCLYSSKANSNATINDSSIWYPQPDQHISIQTFRELKAR
FT QTSRPTWRKTETSLILELSRSMEDQLEEVANLQTTLMPRFSTQIIQPRHSIY"
XX
SQ Sequence 2561 BP; 682 A; 487 C; 595 G; 797 T; 0 other;
ef417915 Length: 2561 01-JAN-2010 Type: N Check: 8443 ..
1 accggatggc cgcgcgattt tttttagtgg tccccctttg aatggccaat
51 cagattttat cctgaactct taattatttt gaaattctta ggcgctaagt
101 tgttaaagtt atatatattg gacattcatt agtggtcgac atactttaat
151 tcaaaatgcc aaagcgggat gccccatggc gtataatggc ggggaccact
201 aaagtgtccc gctcttccaa ttattcacct cgtggaggta tttccaagcg
251 ggatgcttgg gttaacaggc ccatgtacag gaagcccagg atttatcgaa
301 cgttgagagg ccctgatgtt cctaaagggt gtgaaggccc atgtaaggtc
351 cagtcctacg agcagcgtca tgacatttct catcttggca aggtgatgtg
401 tatctctgat atcacacgtg gtaattgtat tacacaccgt gtcggtaagc
451 gtttctgtgt taagtccgta tacattttag ggaagatatg gatggacgaa
501 aatattaaat tgaaaaacca cacgaacagc gtcatcttct ggttggtaag
551 ggatcggaga ccgtatggga cacctatgga ttttggccaa gtgtttaata
601 tgtttgataa tgagcctagt actgctactg tgaagaacga tcttcgtgat
651 cggtttcaag tcatgcatag gtttaatgct aaggttacgg gtggacagta
701 tgctagcaac gagcaagctc ttgtgcggcg tttctggaag gtcaacaatc
751 atgtggtcta caaccatcag gaagcaggga aatatgagaa tcacacggag
801 aacgctttgt tattgtatat ggcatgtaca catgcttcta acccactgta
851 tgcaactttg aaaattcgga tctattttta tgattcgatt acaaattaat
901 aaagtctaaa ttttattgaa tgattttcaa gtacataatt tacataagat
951 ttgtctgttg cgaaacgaac agctctgatt acattattaa cggaaataac
1001 acctaattgg tttaaataca ataagactaa atacttaaat ctacttaaat
1051 atgtcatccc agaagctctc agggatgtcg tccagacttg gaaattgaga
1101 aaagccttgt ggagatccaa cgctttccgc aggttgtggt tgaaacgtat
1151 ctgtagatgg tatatccgtg tcgttgtgta gagggggtcc tctacgttga
1201 ttatcttgaa atagagggga ttggtaatct cccaaataaa gacgccattc
1251 gctgcttgag gcgcagtgat gagttccccg gtgcgtgaat ccattgttgc
1301 gacagttgag atggatgtaa atggagcagc cgcagtttag gtcaatgcgt
1351 cttcggcgaa ttaccttccg tttggctgct ctgtgtcgtg gtttgataga
1401 ggggggagtt gaggaagatg tatttagcat tatgcagtgt ccacgttttt
1451 aaagatatat tttcatgttt gtctaggaag tctttataac tagccccctc
1501 tcctggattg cagagcacga ttgatgggat tcctccttta atttgaactg
1551 gcttcccgta tttgcagttg ctttgccagt cacgttgggc cccaatgagc
1601 tctttccaat gttttagctt taggtattgc ggagtgacat catcaatgac
1651 gttataatgc acctcatttg aataaaccct agaattaaaa tctagatgtc
1701 cactcagata attatgtggg cctaatgcac gagcccacat cgtctttcct
1751 gtacgactat caccctcaat tataatacta ataggtctct ccggccgcgc
1801 agcggcaccc cttccgaaat attcgtcagc ccactcttgc atctcgtcag
1851 gaacattagt gaaggaggaa agttgaaacg gagaaaccca tggctctgga
1901 gcctttgcaa atattctctg gacatgtgtt cttattttat ccagatgtag
1951 aacataatct cgaggttgct cttcttttaa tatattgagt gccgtggttg
2001 gattatctgc gttgagaacc ttggcataag tgtcgtttgc agattggcaa
2051 cctcctctag ctgatcttcc atcgatctgg aaagttccaa aatcaatgaa
2101 gtctccgtct ttctccatgt aggtcttgac gtctgacgag cttttagctc
2151 cctgaatgtt tggatggaaa tgtgctgatc tggttgggga taccaaatcg
2201 aagaatcgtt gattgtggca tttgaatttg ccttcgaact gtataagcac
2251 gtggagatga ggttccccat cttcgtgaag ttctctggtt acgcgaataa
2301 atttcttgtt ggtaggtgtt tgaagtgcct gtaattgtga aagagcttcg
2351 tctttagtta atgaacaatg aggatatgta aggaagaaat tttttgcatt
2401 tactaagaaa cgctttggaa ggggcatttt agtaatataa agagttgctc
2451 cccgattgag ctccttcaaa cttggcaaat gaattgggga aagggtctca
2501 atatatagta gagtccatta tagaatatat ttgccacgtg gcggccatcc
2551 gttataatat t