Sequence of DPV Tomato yellow vein streak virus
Tomato yellow vein streak virus isolate Ba-3 segment DNA-B, complete sequence.
ACC No: EF417916
Dated: 2010-01-01 | Length: 2569 | CRC: -458920114
ID EF417916; SV 1; circular; genomic DNA; STD; VRL; 2569 BP.
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AC EF417916;
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DT 03-MAR-2007 (Rel. 90, Created)
DT 01-JAN-2010 (Rel. 103, Last updated, Version 2)
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DE Tomato yellow vein streak virus isolate Ba-3 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato yellow vein streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2569
RA Ribeiro S.G., Inoue-Nagata A.K., Daniels J., Avila A.C.;
RT "Potato deforming mosaic disease is caused by an isolate of Tomato yellow
RT vein streak virus";
RL Plant Pathol. 55:569-569(2006).
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RN [2]
RC Publication Status: Available-Online prior to print
RP 1-2569
RX PUBMED; 19937269.
RA Albuquerque L.C., Martin D.P., Avila A.C., Inoue-Nagata A.K.;
RT "Characterization of tomato yellow vein streak virus, a begomovirus from
RT Brazil";
RL Virus Genes 0:0-0(2009).
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RN [3]
RP 1-2569
RA Albuquerque L.C., Fernandes-Carrijo F.R., Avila A.C., Ribeiro S.G.,
RA Inoue-Nagata A.K.;
RT ;
RL Submitted (01-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL Virology, Embrapa Vegetables, Km 09, BR060, Cx. Postal 218, Brasilia, DF
RL 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2569
FT /organism="Tomato yellow vein streak virus"
FT /segment="DNA-B"
FT /host="potato"
FT /lab_host="tomato"
FT /isolate="Ba-3"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collected_by="Julio Daniels"
FT /collection_date="1983"
FT /db_xref="taxon:55216"
FT gene 402. .1172
FT /gene="NSP"
FT CDS 402. .1172
FT /codon_start=1
FT /gene="NSP"
FT /product="BV1"
FT /db_xref="GOA:A3RJ11"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:A3RJ11"
FT /protein_id="ABN80225.1"
FT /translation="MYINKYRRGWISNQRRGYSRQSFFKRSYYVKRTDGKRRSSSTTQV
FT NEESRLSQQRIHENQFGPEFVMVHNTAVSTFITFPNLGKTEPNRSRSYIKLKRLRFKGT
FT VKIERLHTDMKMDCIIPNIEGVFSLVIVVDRKPHLNPTGCLHTFDELFGARIHSHGNLA
FT ITASLKDRFYIRHVWKKVISVEKDSMMVDLEGTTSLSNKRYNCWSAFKDLDHDSCNGVY
FT ANISKNALLVYYCWMSDTMSTASSFVSFDLDYVG"
FT gene complement(1306. .2187)
FT /gene="MP"
FT CDS complement(1306. .2187)
FT /codon_start=1
FT /gene="MP"
FT /product="BC1"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:A3RJ12"
FT /protein_id="ABN80226.1"
FT /translation="MDSQIVCPPNAFNYIESRRDEYQLSHDLTEIILQFPSKATQLSAR
FT LNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDQRMTENESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYKVCDSNVHQMTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIMS
FT KQFTVNDIDFSHVGYGKWERKLIRSASTSRFGLPGPIELNPGESWATRSTIGPAQLEAE
FT SDIAEVLHPYKDLNRLGTAILDPGDSASIIGAQRTQSNITLSMAQLNDLVRTTVQECIK
FT TNCIPSQPKSLK"
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SQ Sequence 2569 BP; 776 A; 419 C; 524 G; 850 T; 0 other;
ef417916 Length: 2569 01-JAN-2010 Type: N Check: 7182 ..
1 accggatggc cgcgcgattt ttttatggtg gaccccatgt gaatataatt
51 gagcgcattt ttgacgtccg cgaatttagt tgagcgcaaa ttttgagttc
101 cgccagctta tcaagtcgta caactttaat ttgaaataaa gtagagatat
151 tttgcttaac caatgaattc gcatctgacg agcttattta tttgttatag
201 tatttatgag tcatgacgtt gactgatcgt tacttgtgtg tcagttgaga
251 tatatatggc gagtcatatc attataccgt gtgtttctat tttttacgtg
301 gaccaatagg ttattgttat ggaatgttat taagttacat attaaagtat
351 gatttttata tataaactcc gtgataattg aaatagatat caacatataa
401 catgtatatt aataagtata gacgtggctg gatatctaat caacgacgag
451 gctattcacg tcagtctttc ttcaagcgtt cttattatgt taaacgtaca
501 gatgggaaac gtcgatcgag tagcacgact caagtcaatg aggagagcag
551 attgtcacaa cagcgaattc atgagaacca gtttggtcca gaatttgtaa
601 tggttcataa tacagccgta tcaaccttta ttactttccc caatcttggt
651 aaaactgaac cgaatcgatc taggtcatat ataaagttga aacgtttgcg
701 tttcaaaggt actgttaaaa ttgaacgttt gcatactgat atgaaaatgg
751 actgtataat tccaaatatc gaaggagtgt tttcgttggt catcgtagtt
801 gatcgtaaac cccatttgaa tccaacagga tgtctacata catttgatga
851 gctatttggt gcacgaatac acagtcatgg caatttagct ataaccgcat
901 ctctgaaaga ccgattttac atacgtcatg tttggaagaa agtaatatct
951 gttgagaaag atagcatgat ggttgatctt gaaggaacga catcactatc
1001 taacaagcgt tataattgtt ggtcagcttt taaggatctt gatcatgatt
1051 catgtaatgg ggtttatgcg aatataagca agaacgccct tttagtttac
1101 tattgttgga tgtctgatac catgtctaca gcatcctcat ttgtatcgtt
1151 tgatcttgat tatgtgggtt aaataataat attatgagct ataattacag
1201 tcagacttac ataagagatt caatcactca agaaaacctt ataagataat
1251 aataattatc tgtggctgcg cagctgaata tacccaccat aaaaaactag
1301 atattttatt tcaaagattt gggctgtgaa ggaatacaat tagttttaat
1351 acattcttgg accgtcgtcc taacaagatc gtttaattgg gccattgata
1401 gtgttatatt cgattgcgtt ctttgggccc caattattga agccgaatca
1451 cctgggtcta agatggcagt gcccaacctg ttaagatcct tgtatggatg
1501 taacacttca gcaatatctg attctgcttc taactgggcc ggccctattg
1551 tactccgtgt ggcccaagac tctcctgggt ttaattctat tgggccggga
1601 agcccaaatc tagaagtgga tgcggatctt atcaatttcc tctcccactt
1651 cccataaccc acatgagaaa agtcgatgtc atttacggta aattgtttgg
1701 acattatctt tactgtgggt gctctgaaag gtatatcaac cgaatgtttt
1751 gcagttgata gcttcagctt ccctttgaat tttgcgaagt gtgtcatctg
1801 atgaacattt gaatcacaaa ccttataata tagcttccat ggaattgggt
1851 ctttgaggga gaagaatgac gatgagaaat agtggagatc tatgttgcat
1901 cttataggaa aagtccatga cgcctgtaat gattcatttt cagtcatcct
1951 ctggtcatga atctccacaa ttactgatcc tgttgcgttt atgggtacct
2001 gttgcctata ttctatgacg caatggtcaa tcttcataca gcttctattt
2051 agtcttgcac ttaattgagt cgcttttgaa ggaaactgca atatgatttc
2101 cgtaaggtcg tgagatagct gatattcatc acgacgagat tctatataat
2151 taaaggcgtt tggtgggcaa actatttgag aatccatata tcttaaatat
2201 ggctaagcag cgataacgtt tatgtaactg agtgggagag gaaaataaga
2251 tataaatatt tgaaggataa tttagttgtg agagaaaaca atgaaatgaa
2301 tgataatata ttatgaagaa gctgctattc ttatatagac attgaactgg
2351 ttatagagag tctggttaat taataataag gatatgtatt gaagaaatat
2401 gttgagttta tggtaaaacc ctttgatggg ggtttatttg taaatatgag
2451 agttgctccc cgattgagct ccttcaaact tggcaaatga attggggaaa
2501 gggtctcaat atatagtaga gtccattata gaatatattt gccacgtggc
2551 ggccatccgt tataatatt