Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus isolate recombinant Ty-1St-C.33 15dpt type VII REn and TrAP genes, complete cds; and Rep gene, partial cds.

ACC No: EF423690

Dated: 2007-06-27 | Length: 838 | CRC: -530270279

                
ID   EF423690; SV 1; linear; genomic DNA; STD; VRL; 838 BP.
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AC   EF423690;
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DT   27-JUN-2007 (Rel. 92, Created)
DT   27-JUN-2007 (Rel. 92, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus isolate recombinant Ty-1St-C.33 15dpt type
DE   VII REn and TrAP genes, complete cds; and Rep gene, partial cds.
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KW   .
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OS   Tomato yellow leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-838
RX   PUBMED; 17467025.
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   "Frequent occurrence of recombinants in mixed infections of tomato yellow
RT   leaf curl disease-associated begomoviruses";
RL   Virology 365(1):210-219(2007).
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RN   [2]
RP   1-838
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   ;
RL   Submitted (02-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora,
RL   CSIC, Algarrobo-Costa, Malaga 29750, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .838
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /isolate="recombinant Ty-1St-C.33 15dpt type VII"
FT                   /mol_type="genomic DNA"
FT                   /country="Spain:Malaga"
FT                   /note="TYLCSV/TYLCV recombinant"
FT                   /db_xref="taxon:10832"
FT   CDS             complement(61. .465)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /protein_id="ABR27641.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFTITRHNQQPFNSKYNF
FT                   LTFQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRVFRYQVYKYLNNIGVISLNN
FT                   VIRAVDYVLFDVFENTIDVIEQHEIKYNLY"
FT   CDS             complement(206. .613)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /protein_id="ABR27642.1"
FT                   /translation="MQPSSPSTSHCSQIPIKVQHKIAKKRQVRRKRIDLDCGCSYYQHL
FT                   NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPIFHDNQTQPTTIQQQIQFPNISNQVQPQ
FT                   LEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL"
FT   CDS             complement(522. .>838)
FT                   /codon_start=3
FT                   /product="Rep"
FT                   /protein_id="ABR27643.1"
FT                   /translation="WYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTI
FT                   FLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFTNTNQGPTQDSQEETSEA
FT                   "
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SQ   Sequence 838 BP; 215 A; 148 C; 183 G; 292 T; 0 other;

ef423690 Length: 838  27-JUN-2007  Type: N  Check: 8384  ..

       1  ttctaaccca gtgtatgcta cgttgaaaat acgtatctat ttttatgatg
      51  ctgtaacaaa ttaataaaga ttgtatttta tttcatgttg ttcaattaca
     101  tctattgtgt tctcaaatac atcgaataag acataatcaa ctgctctaat
     151  aacattgttt aatgaaatta cacctatatt attcaaatac ttatacactt
     201  gatacctaaa gactcttaaa aaatgaccag tcggagactg taaggtcgtc
     251  cagatgcgga agttgagaaa acatttgtga atccccagtg ccttcctcaa
     301  gttgtggttg aacctgattt gaaatgttag gaaattgtat ttgctgttga
     351  atggttgttg gttgtgtctg gttatcgtga aatatagggg attgtttatc
     401  tcccagataa aaacgccatt ctctgcctga ggagcagtga tgagttcccc
     451  tgtgcgtgaa tccatgattg ttgcagttga ggtgttggta gtatgaacag
     501  ccacagtcta ggtctatacg cttacgcctc acttgtctct tcttggctat
     551  cttgtgttgg accttgattg gtatttgtga acagtggctc gtagagggtg
     601  acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc
     651  ttcgtctaga tattccctat atgaggaggt aggtcctgga ttgcagagga
     701  agatagtggg tatgcctcct ttaatttgaa tgggcttccc gtactttgtg
     751  ttgctttgcc agtccctctg ggcccccatg aattctttga agtgctttaa
     801  ataatgcggg tctacgtcat caatgacgtt gtaccatg