Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus isolate recombinant MmA-C.19 130dpi type X REn and TrAP genes, complete cds; and nonfunctional Rep gene, partial sequence.

ACC No: EF423703

Dated: 2007-07-23 | Length: 837 | CRC: 54861094

                
ID   EF423703; SV 1; linear; genomic DNA; STD; VRL; 837 BP.
XX
AC   EF423703;
XX
DT   23-JUL-2007 (Rel. 92, Created)
DT   23-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Tomato yellow leaf curl virus isolate recombinant MmA-C.19 130dpi type X
DE   REn and TrAP genes, complete cds; and nonfunctional Rep gene, partial
DE   sequence.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-837
RX   DOI; 10.1016/j.virol.2007.03.045.
RX   PUBMED; 17467025.
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   "Frequent occurrence of recombinants in mixed infections of tomato yellow
RT   leaf curl disease-associated begomoviruses";
RL   Virology 365(1):210-219(2007).
XX
RN   [2]
RP   1-837
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   ;
RL   Submitted (02-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora,
RL   CSIC, Algarrobo-Costa, Malaga 29750, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /isolate="recombinant MmA-C.19 130dpi type X"
FT                   /mol_type="genomic DNA"
FT                   /country="Spain:Malaga"
FT                   /note="TYLCSV/TYLCV recombinant"
FT                   /db_xref="taxon:10832"
FT   CDS             complement(61. .465)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /protein_id="ABS29966.1"
FT                   /translation="MDLRTGEYITAHQATSGVYTFEITNPLYFTITRHNQQPFNSKYNF
FT                   LTFQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRVFRYQVYKYLNNIGVISLNN
FT                   VIRAVDYVLFDVFENTIDVIEQHEIKYNLY"
FT   CDS             complement(206. .613)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /protein_id="ABS29965.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHHIAKKRQVRRRRVDLDCGCSYYIHL
FT                   DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQPTTIQQQIQFPNISNQVQPQ
FT                   LEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL"
FT   misc_feature    complement(522. .>837)
FT                   /note="nonfunctional Rep due to mutation"
XX
SQ   Sequence 837 BP; 218 A; 152 C; 176 G; 291 T; 0 other;

ef423703 Length: 837  23-JUL-2007  Type: N  Check: 5194  ..

       1  ttctaaccca gtgtatgcta cgttgaaaat acgtatctat ttttatgatg
      51  ctgtaacaaa ttaataaaga ttgtatttta tttcatgttg ttcaattaca
     101  tctattgtgt tctcaaatac atcgaataag acataatcaa ctgctctaat
     151  aacattgttt aatgaaatta cacctatatt attcaaatac ttatacactt
     201  gatacctaaa gactcttaaa aaatgaccag tcggagactg taaggtcgtc
     251  cagatgcgga agttgagaaa acatttgtga atccccagtg ccttcctcaa
     301  gttgtggttg aacctgattt gaaatgttag gaaattgtat ttgctgttga
     351  atggttgttg gttgtgtctg gttatcgtga aatatagggg atttgttatc
     401  tcgaaggtat aaacgccact cgttgcttga tgcgcagtga tgtactcccc
     451  tgtgcgtaaa tccatggttt atgcagtcta aatgtatata gtatgaacag
     501  ccacagtcca gatctaccct tctacgcctc acttgtctct tcttggcgat
     551  gtggtgttgg accttgattg atacttgcga acagtggctc gtggatggtg
     601  acgaaggttg cattttttat ggcccaattt ttcaaggata tgtttttttc
     651  ttcgtctaga tattccctat atgaggaggt aggtcctgga ttgcagagga
     701  agatagggga attccccctt taatttgaat gggcttcccg tactttgtgt
     751  tgctttgcca gtccctctgg gcccccatga attctttgaa gtgctttaaa
     801  taatgcgggt ctacgtcatc aatgacgttg taccatg