Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate AB8b polyprotein P2 gene, partial cds.
ACC No: EF426808
Dated: 2009-09-11 | Length: 2088 | CRC: 1729653737
ID EF426808; SV 1; linear; genomic RNA; STD; VRL; 2088 BP.
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AC EF426808;
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DT 31-MAY-2009 (Rel. 101, Created)
DT 11-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE Grapevine fanleaf virus isolate AB8b polyprotein P2 gene, partial cds.
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KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
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RN [1]
RP 1-2088
RX PUBMED; 19409944.
RA Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT "Genetic structure and variability of virus populations in cross-protected
RT grapevines superinfected by Grapevine fanleaf virus";
RL Virus Res. 144(1-2):154-162(2009).
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RN [2]
RP 1-2088
RA Vigne E., Marmonier A., Fuchs M.;
RT ;
RL Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
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FH Key Location/Qualifiers
FH
FT source 1. .2088
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /isolate="AB8b"
FT /mol_type="genomic RNA"
FT /country="France"
FT /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT /db_xref="taxon:12274"
FT CDS <1. .>2088
FT /codon_start=1
FT /product="polyprotein P2"
FT /db_xref="UniProtKB/TrEMBL:C4MBV0"
FT /protein_id="ABR09873.1"
FT /translation="PHLGGSVEQWLAAISTDPSFRQTVKEDVQENRERPDAIRMFSWKV
FT GFGPIDNPEKCDWHFVLTGERPMQPTGPVKAHEVVVPPVKVIPSPPPMPLPYFRPMGAF
FT APTRSGYIRATVERLTREREESRAAALFAELPLEYPQGAPLKLSLAMKFAMLKHTTWRK
FT WYDVSDGRLLEAHPGGPCLPPPPPIQSPPSFSERVREFCRKKSCAKAFALETSLGLNRA
FT WIGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRISTSVAPGRAQWISERRQALRRRE
FT QANSLQGLAAQTDMSFEQARNAYLGAADMIEQGLPLLPPLRSAYAPRGLWRGPSTRANY
FT TLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAVVIDALEIAINPFGMPGNPTD
FT LTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQYSQEEPRRESIIRLYVASTN
FT ATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQVQGTTLRATMMGNTVVVSPEGS
FT LVTGTPEARVEIGGGSSIRMVGPLRWESVEEPGHTFSIRSRSRSVRIDRNVDLPQLEVE
FT PRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMPTFK
FT IVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTLSVPHWLIHHKLGTFSCEIDY
FT GE"
FT mat_peptide <1. .708
FT /product="2A"
FT /note="putative homing protein"
FT mat_peptide 709. .1752
FT /product="2B"
FT /note="movement protein"
FT mat_peptide 1753. .>2088
FT /product="2C"
FT /note="coat protein"
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SQ Sequence 2088 BP; 506 A; 496 C; 566 G; 520 T; 0 other;
ef426808 Length: 2088 11-SEP-2009 Type: N Check: 9932 ..
1 ccccatcttg ggggttccgt agaacaatgg ctggcggcca ttagcactga
51 tccctccttc cgccaaactg ttaaggagga tgtccaggaa aacagggagc
101 ggcctgatgc catccgcatg ttttcctgga aagtgggatt cgggcccatt
151 gacaaccccg aaaaatgcga ctggcatttc gtcctcacgg gcgagagacc
201 aatgcagccg accgggccgg ttaaagccca tgaggtggtg gtgccacctg
251 tgaaggtcat tccttcaccg ccccctatgc ctttgcctta ttttaggcca
301 atgggggctt ttgcacctac ccggtccggg tatattcggg ccactgtgga
351 aagactcacc cgggaacggg aagagtcaag agctgcggca ctctttgccg
401 aactgccatt ggagtaccca caaggtgctc ctttgaagtt gagtttggcg
451 atgaagttcg ccatgctcaa acataccact tggaggaagt ggtatgacgt
501 cagtgacggg cgccttttgg aagctcatcc tggcggtccc tgtcttcccc
551 ctcctccccc aatccaaagt cctccctctt tttctgagag ggttagggaa
601 ttttgcagga agaaatcctg tgccaaggct tttgccttgg aaaccagtct
651 gggccttaac agggcttgga taggtttggt ggacatcccc agtacttctg
701 tgtgctgtgc ggatggaagg actaccggag ggcaaacgat tgctcaagaa
751 gctgatcctt tacaacatag gattagtaca tcagtagccc ccggtagggc
801 gcagtggatc tccgagcgca gacaagctct gcgaaggaga gagcaagcaa
851 atagcttgca gggtcttgcc gctcaaacag atatgtcttt tgagcaagcc
901 aggaatgctt atctcggtgc tgccgatatg atagagcaag gcctaccatt
951 gcttccccct ctgcgcagcg cttatgcccc taggggttta tggagggggc
1001 cctcaaccag agccaattac acgctagatt ttaggctcaa tggtattccg
1051 accgggacaa acacattaga aatattgtat aatcctgtgt cggaagaaga
1101 gatggaagaa taccgcgaca ggggcatgtc ggctgtggtg attgatgcgc
1151 ttgaaatagc cattaaccca tttggcatgc ctgggaaccc aacagatttg
1201 actgtcgtgg cgacgtatgg gcatgagcgt gatatgacgc gtgcctttat
1251 tggatctgct tccacgttct tagggaatgg gttagctaga gccattttct
1301 tccccggctt gcaatatagc caggaagaac caaggcgcga atctataatt
1351 cgcctatacg tcgcttctac taatgccact gtagacactg attcagtctt
1401 ggcagccatt agtgttggca ctctgcgtca acacgttggc tccatgcact
1451 atcgcacagt ggctagtaca gtacaccaag cccaggtaca aggaacgacg
1501 ctcagggcca ctatgatggg taatactgtt gtagtgtcac ctgaaggaag
1551 tttggttact gggacccccg aagcaagagt tgaaataggg ggtggttcta
1601 gcattaggat ggtgggacct ctgcgatggg aaagtgtaga ggaaccggga
1651 cataccttct ctatcagaag tcgttcgcga tctgtgagga tcgatagaaa
1701 cgttgatctt cctcaacttg aggttgagcc cagactgagc tcaaccgtga
1751 gaggattagc tggtagagga gtggtctata ttcccaagga ctgccaggca
1801 aataggtatc tgggcaccct gaacatacgt gatatgatct cagattttaa
1851 gggtgtccag tatgaaaaat ggataactgc aggattagtc atgcctactt
1901 ttaaaatagt cgttaggctt cctgcaaatg cctttactgg attgacgtgg
1951 gtaatgagtt ttgatgctta taaccggata actagtagaa tcactgctag
2001 tgctgatcct gtatataccc tgtcggtccc acattggctt atccatcata
2051 agttgggcac gttttcatgt gaaatagact atggagag