Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate AB13a polyprotein P2 gene, partial cds.
ACC No: EF426813
Dated: 2009-09-11 | Length: 2097 | CRC: 451531699
ID EF426813; SV 1; linear; genomic RNA; STD; VRL; 2097 BP.
XX
AC EF426813;
XX
DT 31-MAY-2009 (Rel. 101, Created)
DT 11-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE Grapevine fanleaf virus isolate AB13a polyprotein P2 gene, partial cds.
XX
KW .
XX
OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-2097
RX PUBMED; 19409944.
RA Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT "Genetic structure and variability of virus populations in cross-protected
RT grapevines superinfected by Grapevine fanleaf virus";
RL Virus Res. 144(1-2):154-162(2009).
XX
RN [2]
RP 1-2097
RA Vigne E., Marmonier A., Fuchs M.;
RT ;
RL Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
XX
FH Key Location/Qualifiers
FH
FT source 1. .2097
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /isolate="AB13a"
FT /mol_type="genomic RNA"
FT /country="France"
FT /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT /db_xref="taxon:12274"
FT CDS <1. .>2097
FT /codon_start=1
FT /product="polyprotein P2"
FT /db_xref="UniProtKB/TrEMBL:C4MBV5"
FT /protein_id="ABR09878.1"
FT /translation="PHLGGSVEQWLAAIETDPSFRQTVKEDVQANRERPDAIRMFSWKV
FT GFGPIDNPNNCNWHFVLTGERSAQPTRPVKVDEVVVVPQPKKVVIPSPPPPPAPYFRAV
FT GAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQGAPLKLSLAMKFAMLKHTT
FT WRKWYDTSDERLMEAHPGGPCLPPPPPIQKPPSFQERVRESCRIKSCARAFALETSLGL
FT NRAWVGLVDVPSTSVCCADGRTTGGQTIAQEADPLQHRISTSVAPGRAQWISERRQALR
FT RREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPPLRSAYAPRGLWRGPSTR
FT ANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAVVIDALEIAINPFGMPGN
FT PTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQYSQEEPRREPIIRLYVA
FT STNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQVQGTTLRATMMGNTVVVSP
FT EGSLVAGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIRSRSRSVRIDRNVDLPQL
FT EAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMP
FT TFKIVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTLSVPHWLIHHKKGTFSCE
FT IDYGE"
FT mat_peptide <1. .717
FT /product="2A"
FT /note="putative homing protein"
FT mat_peptide 718. .1761
FT /product="2B"
FT /note="movement protein"
FT mat_peptide 1762. .>2097
FT /product="2C"
FT /note="coat protein"
XX
SQ Sequence 2097 BP; 514 A; 507 C; 576 G; 500 T; 0 other;
ef426813 Length: 2097 11-SEP-2009 Type: N Check: 2571 ..
1 ccccatttgg ggggttctgt ggaacaatgg ctggcggcca ttgaaactga
51 tccctccttc cgccaaactg tcaaggagga tgtccaggca aaccgggagc
101 gtccagacgc tatccggatg ttttcctgga aagtgggatt cgggcccatt
151 gacaacccga ataattgcaa ctggcatttc gtccttacgg gcgaaaggtc
201 agcgcagccg acccggccgg ttaaagtcga tgaggttgtg gtggtgccac
251 aaccgaagaa ggtggtgatt ccatcaccgc ctcctccccc ggctccctac
301 tttagggctg ttggggcttt tgcaccaacc aggtccgggt ttattcgggc
351 cactgtggaa agactcaccc gggaacggga agagtcgaga gctgcggcac
401 tctttgccga actgccattg gagtaccccc agggtgctcc tttgaagttg
451 agcctggcga tgaaattcgc catgctcaaa cataccactt ggaggaagtg
501 gtatgacacc agtgatgagc gcctcatgga ggcccatcca ggtggacctt
551 gtcttcctcc tcctccccca atccaaaaac ctccctcttt ccaggagagg
601 gttagggagt cttgcaggat aaaatcctgc gccagggctt ttgccttgga
651 gacctccctg ggtcttaata gggcctgggt aggtttggtg gacgtcccca
701 gcacttctgt gtgctgtgcg gatggaagaa ctaccggtgg gcaaacgatt
751 gcccaagaag ctgatcccct acaacatagg atcagcacat cagtagcccc
801 cggtagggca caatggattt ccgagcgcag acaggctctg cggaggagag
851 agcaggcaaa tagcttgcag ggtcttgctg ctcaaactga tatgactttt
901 gagcaagcca ggaacgctta tcttggcgct gctgacatga tagagcaagg
951 cttaccacta cttccccctc tgcgtagtgc ttatgcccct aggggtttat
1001 ggaggggacc ctcaaccaga gccaattata cgctagattt taggctcaat
1051 ggtataccga ccgggaccaa tacactggaa attttatata atcccgtgtc
1101 ggaggaagag atggaagagt accgggatag aggtatgtcg gcagtggtga
1151 ttgatgcgct agaaatagcc ataaatccat ttggcatgcc aggaaatcca
1201 acggacttaa ccgtcgtggc aacatatggg catgagcgtg atatgacacg
1251 cgcctttatt ggatctgctt ccacattcct agggaatggg ttagctagag
1301 ccatattctt cccaggctta caatatagtc aggaggaacc aaggcgtgag
1351 cccataattc gcctatatgt tgcttccact aacgccacag tagacactga
1401 ttcagtcttg gcagccatca gtgttggcac tttgcgtcaa cacgttggtt
1451 ccatgcacta tcgaactgtg gccagcactg tgcaccaggc ccaggtgcaa
1501 ggtacaactc ttagggcaac tatgatgggt aatactgttg tagtgtcgcc
1551 cgaaggaagc ctagttgctg gaacccctga agcgagagtc gaaataggag
1601 gtggttctag tattaggatg gtgggacctc tacaatggga aagtgtggag
1651 gaaccagggc aaaccttctc tatcagaagc cgctcacggt ctgtgaggat
1701 tgacagaaat gttgatcttc cccaacttga ggccgagccc agattgagct
1751 cgaccgtgag gggattggct ggtaggggag tagtctacat tcccaaggat
1801 tgccaggcaa atagatactt gggcaccctg aatatacgag atatgatttc
1851 agattttaag ggtgttcagt atgaaaagtg gataactgca ggattagtca
1901 tgccaacttt taagattgtt gttaggctac ctgctaatgc ctttactggg
1951 ttgacatggg tgatgagctt tgatgcttat aatcggataa ctagtagaat
2001 cactgctagt gcggatcccg tatataccct gtcagtcccc cattggctta
2051 tccaccacaa gaaaggcacg ttttcatgtg agatagacta cggagaa