Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate C8c polyprotein P2 gene, partial cds.

ACC No: EF426836

Dated: 2009-09-11 | Length: 1760 | CRC: -1436025564

                
ID   EF426836; SV 1; linear; genomic RNA; STD; VRL; 1760 BP.
XX
AC   EF426836;
XX
DT   31-MAY-2009 (Rel. 101, Created)
DT   11-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Grapevine fanleaf virus isolate C8c polyprotein P2 gene, partial cds.
XX
KW   .
XX
OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1760
RX   PUBMED; 19409944.
RA   Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT   "Genetic structure and variability of virus populations in cross-protected
RT   grapevines superinfected by Grapevine fanleaf virus";
RL   Virus Res. 144(1-2):154-162(2009).
XX
RN   [2]
RP   1-1760
RA   Vigne E., Marmonier A., Fuchs M.;
RT   ;
RL   Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1760
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /isolate="C8c"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .1620
FT                   /codon_start=1
FT                   /product="polyprotein P2"
FT                   /db_xref="UniProtKB/TrEMBL:C4MBX8"
FT                   /protein_id="ABR09901.1"
FT                   /translation="GHTFSIRSRSRSVRIDRNVDLPQLEVEPRLSSTVRGLAGRGVVYI
FT                   PKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMS
FT                   FDAYNRITSRITASADPVYTLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESP
FT                   RLHFTCLTGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGAFSGKFQFLTCPPI
FT                   FFDLTAVTALKSAGLTLGQVPMVGTTKVYNLNSALVSCVLGMGGTIRGRVHICAPIFYS
FT                   IVLWVVSEWNGTTMDWNELFKYPGVYVENDGSFEVKIRSPYHRTPARLLAGQNQRDMSS
FT                   LNFYAIAGPIAPSGETARLPIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIE
FT                   IGSRFFDFTSSTCRVSMGENPFAAMIACHGLHSGVLDIKLQWSLNTEFGKSSGSVTITK
FT                   LVGDKAMGLDGPSQVFAIQKLEGVTDLLIGNFAGANPNSHFSLYSRWMAIKLDRAKSIK
FT                   VLRVLCKPRPGFSFYGRTSFPV"
FT   mat_peptide     <1. .105
FT                   /product="2B"
FT                   /note="movement protein"
FT   mat_peptide     106. .1617
FT                   /product="2C"
FT                   /note="coat protein"
XX
SQ   Sequence 1760 BP; 441 A; 335 C; 435 G; 549 T; 0 other;

ef426836 Length: 1760  11-SEP-2009  Type: N  Check: 4749  ..

       1  ggacatacct tctctatcag aagtcgttcg cgatctgtga ggatcgatag
      51  aaacgttgat cttcctcaac ttgaggttga gcccagactg agctcaaccg
     101  tgagaggatt agctggtaga ggagtggtct atattcccaa ggactgccag
     151  gcaaataggt atttgggcac cctgaacata cgtgatatga tctcagattt
     201  taagggtgtc cagtatgaaa aatggataac tgcaggatta gtcatgccta
     251  cttttaaaat agtcgttagg cttcctgcaa atgcctttac tggattgacg
     301  tgggtaatga gttttgatgc ttataaccgg ataactagta gaatcactgc
     351  tagtgctgat cctgtatata ccctgtcggt cccacattgg cttatccatc
     401  ataagttggg cacgttttca tgtgaaatag actatggaga gttgtgtggt
     451  cacgccatgt ggttcaaatc cacaacattc gaatctccaa ggttgcattt
     501  tacatgtcta acgggcaaca acaaagagct agcggcagac tggcaagctg
     551  tcgtggaatt gtatgctgag ttggaagagg ccacctcttt tcttgggaaa
     601  ccaactttgg tttttgaccc aggtgctttt agtggcaaat ttcaatttct
     651  tacttgccct cccatattct tcgatctaac agccgtcacg gctcttaaga
     701  gtgctgggct gacattgggg caagtcccaa tggttggcac taccaaggtt
     751  tataatctta atagtgctct tgtgagctgt gttttgggta tgggaggtac
     801  tattagagga agggtgcata tttgtgcgcc aatcttctat agtattgttt
     851  tatgggttgt tagcgagtgg aacgggacca ctatggactg gaacgaactt
     901  tttaagtatc ctggggttta tgtggagaat gatgggagtt ttgaagttaa
     951  gattcgctct ccatatcacc gaacgcctgc tagattgctt gctggtcaaa
    1001  atcagaggga catgagctct ctgaatttct atgcaatagc aggacctatc
    1051  gctccatcgg gtgagaccgc acggcttcct atcgtcgtac aaattgatga
    1101  aattgtgcgc ccagacctct ctttgccaag ttttgaagat gattatttcg
    1151  tgtgggtgga tttttcagag ttcactctcg ataaagaaga aattgagatt
    1201  ggttctcgtt tcttcgattt cacttcaagt acttgtagag tgtcaatggg
    1251  agaaaacccg tttgctgcaa tgatcgcttg tcatggattg catagtggtg
    1301  tattggacat caagcttcaa tggagtctga acaccgaatt tggcaagagc
    1351  agcgggagcg ttactatcac gaagttggtg ggcgataaag ccatgggcct
    1401  agatggacct tctcaggttt ttgccataca aaagctagaa ggggttacgg
    1451  atttgttaat tgggaatttc gcaggagcaa acccaaactc acatttctcc
    1501  ctctatagtc gatggatggc aattaaattg gaccgagcaa agagtattaa
    1551  agtactccga gtcttgtgca agcctcgtcc aggtttcagt ttttatggaa
    1601  gaaccagctt cccagtctag ggtatctgac tttaaaagac ccatgtatat
    1651  atgtacatct tattagttat gtgcgttgtt ttgtgttgta gtttgcttta
    1701  acttgtctac tgctttagtg tgcttaattt catgctttta gtggcgatag
    1751  tgtgttgttt