Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate C17b polyprotein P2 gene, partial cds.

ACC No: EF426846

Dated: 2009-09-11 | Length: 1760 | CRC: 535186171

                
ID   EF426846; SV 1; linear; genomic RNA; STD; VRL; 1760 BP.
XX
AC   EF426846;
XX
DT   31-MAY-2009 (Rel. 101, Created)
DT   11-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Grapevine fanleaf virus isolate C17b polyprotein P2 gene, partial cds.
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KW   .
XX
OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-1760
RX   PUBMED; 19409944.
RA   Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT   "Genetic structure and variability of virus populations in cross-protected
RT   grapevines superinfected by Grapevine fanleaf virus";
RL   Virus Res. 144(1-2):154-162(2009).
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RN   [2]
RP   1-1760
RA   Vigne E., Marmonier A., Fuchs M.;
RT   ;
RL   Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1760
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /isolate="C17b"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .1620
FT                   /codon_start=1
FT                   /product="polyprotein P2"
FT                   /db_xref="UniProtKB/TrEMBL:C4MBY8"
FT                   /protein_id="ABR09911.1"
FT                   /translation="GQTFSIRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYI
FT                   PKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMPIFKIVIRLPANAFTGLTWVMS
FT                   FDAYNRITSRITASADPVYTLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESP
FT                   RLHFTCLTGNNKELAADWQAVVELYAELEEATTFLGKPTLVFDPGVFNGKFQFLTCPPI
FT                   FFDLTAVTALRSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTIKGRVHICAPIFYS
FT                   IVLWVVSEWNGTTMDWNELFKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSS
FT                   LNFYAIAGPIAPSGETARLPIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLGKEEIE
FT                   IGSRFFDFTSNTCKVSLGENPFAAMIACHGLHSGVLDLKFQWSLNTEFGKSSGSVTITK
FT                   LVGDKATGLDGPSQVIALQRLEGVAELLVGNFAGANPNSHFSLYSRWMAIKLDQAKSIK
FT                   VLRVLCKPRPGFSFYGRTSFPV"
FT   mat_peptide     <1. .105
FT                   /product="2B"
FT                   /note="movement protein"
FT   mat_peptide     106. .1617
FT                   /product="2C"
FT                   /note="coat protein"
XX
SQ   Sequence 1760 BP; 442 A; 334 C; 435 G; 549 T; 0 other;

ef426846 Length: 1760  11-SEP-2009  Type: N  Check: 3304  ..

       1  gggcaaactt tttctatcag gagtcgatca cgatcggtga ggattgacag
      51  aaatgttgat cttcctcaac ttgaggctga gcccagatta agctcaaccg
     101  tgaggggatt ggctggtaga ggagttgttt acattcccaa ggattgccag
     151  gcaaaccgct acttgggcac cctaaacata cgtgatatga tttcagattt
     201  taagggtgtt caatatgaaa agtggataac tgcaggattg gttatgccta
     251  ttttcaagat agtaattagg ctacctgcaa atgcctttac cggactgaca
     301  tgggtgatga gctttgatgc ttacaaccgg ataactagta gaatcactgc
     351  tagtgcggat ccagtataca ccctatcagt cccacattgg cttatccatc
     401  ataagttggg cacgttttca tgtgagatag actatggaga attgtgtggc
     451  catgccatgt ggtttaaatc cacaacattt gaatctccgc ggttgcattt
     501  cacgtgttta acgggcaaca acaaagagtt ggcggcagac tggcaagctg
     551  tcgtggaact gtatgctgaa ttggaagagg ctaccacctt ccttgggaaa
     601  ccaactttgg tttttgaccc aggagttttc aatggtaaat tccaattttt
     651  aacttgccct cctatattct ttgatttaac agccgtcacg gctcttagaa
     701  gtgctgggct gacgttggga caagttccga tggtcggcac tacaaaggtt
     751  tataacttaa atagcactct tgtgagttgt gttttgggta tgggaggtac
     801  tattaaagga agggtgcaca tttgtgcacc gatcttttat agtatagttt
     851  tatgggttgt tagcgagtgg aacgggacca ctatggattg gaatgaactt
     901  ttcaaatatc ccggggtgta tgtggaagag gatggaagct ttgaagttaa
     951  aattcgctct ccatatcacc gaacacctgc tagattgctc gctggacaga
    1001  gtcagagaga catgagctct ttgaatttct acgcaatagc agggcctatc
    1051  gctccatcgg gtgaaacggc gcggctcccc attgtcgtgc aaattgatga
    1101  gatcgtgcgc ccagacctct ctctacctag ttttgaagat gattatttcg
    1151  tttgggtgga tttttctgaa ttcactctcg gtaaagaaga aattgagatc
    1201  ggctctcgtt tctttgattt tacttcaaat acttgtaaag tgtctctggg
    1251  agagaatccg tttgctgcaa tgattgcctg ccatgggttg cacagtggtg
    1301  tgttagacct caaatttcaa tggagtctaa acaccgaatt tggcaagagc
    1351  agcgggagcg tcactatcac gaagttggtt ggtgataagg ctactggtct
    1401  ggatggtcct tcacaggtta ttgccttaca gagactagag ggagtagcag
    1451  aattgttggt tgggaacttt gcaggtgcaa accccaattc tcacttctct
    1501  ctctatagtc gatggatggc aattaaacta gatcaagcta agagcattaa
    1551  agtgctccgt gttttgtgta agcctcgtcc aggtttcagt ttttatggaa
    1601  gaaccagctt cccagtctag ggtatctgac tttaaaagac ccgagtgtac
    1651  atatatgttt tattaattat gtgtgttatt ttgtgttgta atttgtttta
    1701  acttgtttac tgctttagcg cgtttatttt ctcgctttta gtggcgacag
    1751  tgtgttgttt