Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate C18b polyprotein P2 gene, partial cds.

ACC No: EF426848

Dated: 2009-09-11 | Length: 1760 | CRC: -119707028

                
ID   EF426848; SV 1; linear; genomic RNA; STD; VRL; 1760 BP.
XX
AC   EF426848;
XX
DT   31-MAY-2009 (Rel. 101, Created)
DT   11-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Grapevine fanleaf virus isolate C18b polyprotein P2 gene, partial cds.
XX
KW   .
XX
OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-1760
RX   PUBMED; 19409944.
RA   Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT   "Genetic structure and variability of virus populations in cross-protected
RT   grapevines superinfected by Grapevine fanleaf virus";
RL   Virus Res. 144(1-2):154-162(2009).
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RN   [2]
RP   1-1760
RA   Vigne E., Marmonier A., Fuchs M.;
RT   ;
RL   Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1760
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /isolate="C18b"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .1620
FT                   /codon_start=1
FT                   /product="polyprotein P2"
FT                   /db_xref="UniProtKB/TrEMBL:C4MBZ0"
FT                   /protein_id="ABR09913.1"
FT                   /translation="GQTFSIGSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYI
FT                   PKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMS
FT                   FDAYNRITSRITASADPVYTLSVPHWLIHHKKGTFSCEIDYGELCGHAMWSKSTTFESP
FT                   RLHFTCLTGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGVFNGKFQYLTCPPI
FT                   FFDLTAVAALKSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYS
FT                   IILWVVSEWNGTTMDWNELFKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSS
FT                   LNFYAIAGPIAPSGETARLPIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIE
FT                   IGSRFFDFTSNTCRVSLGENPFAAMIACHGLHSGVLDLKFQWSLNTEFGKSSGSVIITK
FT                   LVGDKATGLDGPSQVIALQKLEGATELLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIK
FT                   LLRVLCKPRPGFSFYGRTSFPV"
FT   mat_peptide     <1. .105
FT                   /product="2B"
FT                   /note="movement protein"
FT   mat_peptide     106. .1617
FT                   /product="2C"
FT                   /note="coat protein"
XX
SQ   Sequence 1760 BP; 436 A; 339 C; 439 G; 546 T; 0 other;

ef426848 Length: 1760  11-SEP-2009  Type: N  Check: 1614  ..

       1  gggcaaacct tctctatcgg aagccgctca cggtctgtga ggattgacag
      51  aaatgttgat cttccccaac ttgaggccga gcccagattg agttcgaccg
     101  tgaggggatt ggctggtagg ggggtagtct acattcccaa ggattgccag
     151  gcaaatagat acttgggcac cctgaatata cgagatatga tttcagattt
     201  taagggtgtc cagtacgaaa agtggataac tgcaggatta gtcatgccta
     251  cttttaagat tgttgttagg ctacctgcta atgcctttac cggattgacg
     301  tgggtgatga gcttcgatgc ttataaccgg ataactagta gaatcactgc
     351  tagtgcggat cctgtataca ccctgtcagt cccccattgg cttatccacc
     401  acaagaaagg cacgttttcg tgtgagatag actacggaga attgtgtggt
     451  cacgccatgt ggtccaagtc cacgacgttt gaatctccaa ggttacattt
     501  cacatgttta acgggcaata ataaagagtt agcggcagac tggcaagctg
     551  tcgtggaact atatgctgaa ttggaagagg ccacttcttt tcttgggaaa
     601  ccaactttgg tttttgatcc gggagttttt aatggtaaat tccaatatct
     651  tacttgccct cccatattct ttgatttgac agccgtcgcg gctcttaaga
     701  gtgctgggct gacattggga caagtcccaa tggttggtac tactaaggtt
     751  tataatttaa acagcactct agtgagttgt gttctgggta tgggaggtac
     801  tattagagga agggtacaca tttgtgcgcc aatcttctat agtataattt
     851  tatgggttgt cagtgagtgg aacgggacca ctatggattg gaatgagctt
     901  ttcaaatatc ccggggtgta tgtggaagag gatggaagct ttgaagttaa
     951  aatccgctct ccatatcacc gaacacctgc tagattgctc gctggacaga
    1001  gccagagaga catgagctcc ctgaatttct acgcaatagc agggcctatc
    1051  gctccatcgg gtgaaacggc gcggcttccc atcgttgtgc aaattgatga
    1101  gatcgtgcgc ccagacctct ctctacctag ttttgaagat gattatttcg
    1151  tttgggtgga cttttctgag ttcactcttg ataaagaaga aatcgagatt
    1201  ggctctcgtt tctttgattt tacttcaaat acttgtagag tatctctggg
    1251  agagaatccg tttgctgcaa tgattgcctg ccatgggttg catagtggtg
    1301  tgttagacct caaatttcaa tggagtttaa acaccgaatt tggcaagagc
    1351  agtgggagcg tcattatcac gaagttggtt ggtgataagg ctactggtct
    1401  ggacggtcct tctcaggtta ttgccttaca gaaactagag ggggcaacag
    1451  aattgttgat tgggaatttt gcaggtgcaa accccaattc tcacttctct
    1501  ctctatagtc gatggatggc aattaaatta gatcaggcta agagcattaa
    1551  attgctccgt gttttgtgta agcctcgtcc aggtttcagt ttttacggaa
    1601  gaaccagctt cccagtctag ggtatctgac tttaaaagac ccaagtgtac
    1651  acatgtgctt tattaattat gtgtgttatt ttgtattgta atttgtttta
    1701  acttgtttac tgctttagtg tgtttatttt catgctttta gtggcgacag
    1751  tgtgttgttt