Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate C18c polyprotein P2 gene, partial cds.

ACC No: EF426849

Dated: 2009-09-11 | Length: 1760 | CRC: -1021647665

                
ID   EF426849; SV 1; linear; genomic RNA; STD; VRL; 1760 BP.
XX
AC   EF426849;
XX
DT   31-MAY-2009 (Rel. 101, Created)
DT   11-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Grapevine fanleaf virus isolate C18c polyprotein P2 gene, partial cds.
XX
KW   .
XX
OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-1760
RX   PUBMED; 19409944.
RA   Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT   "Genetic structure and variability of virus populations in cross-protected
RT   grapevines superinfected by Grapevine fanleaf virus";
RL   Virus Res. 144(1-2):154-162(2009).
XX
RN   [2]
RP   1-1760
RA   Vigne E., Marmonier A., Fuchs M.;
RT   ;
RL   Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1760
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /isolate="C18c"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .1620
FT                   /codon_start=1
FT                   /product="polyprotein P2"
FT                   /db_xref="UniProtKB/TrEMBL:C4MBZ1"
FT                   /protein_id="ABR09914.1"
FT                   /translation="GQTFSIRSRSRSVRIDRNVDLPQLEAEPRLGSTVRGLAGRGVVYI
FT                   PKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMS
FT                   FDAYNRITSRITASADPVYTLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESP
FT                   RLHFTCLTGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPI
FT                   FFDLTAVTALKSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTIRGKVHICAPIFYS
FT                   IVLWVVSEWNGTTMDWNELFKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSS
FT                   LNFYAIAGPIAPSGETAQLPIVVQINEIVRPDLSIPSFEDDYFVWVDFSEFTLDKEEIE
FT                   IGSRFFDFTSSTCRVSMGENPFAAMIACHGLHSGVLDLKFQWSLSTEFGKSSGSVTVTK
FT                   LVGDKAMGLDGPSQVFAIQKLEGVAELLVGNFAGANPNTHFSLYSRWMAIKLDQAKSIK
FT                   VLRVLCKPRPGFSFYGRTSFPV"
FT   mat_peptide     <1. .105
FT                   /product="2B"
FT                   /note="movement protein"
FT   mat_peptide     106. .1617
FT                   /product="2C"
FT                   /note="coat protein"
XX
SQ   Sequence 1760 BP; 443 A; 332 C; 436 G; 549 T; 0 other;

ef426849 Length: 1760  11-SEP-2009  Type: N  Check: 2512  ..

       1  gggcaaacct tctctatcag aagtcgttcg cggtctgtga ggattgacag
      51  aaatgttgat cttccccaac ttgaggctga gcccaggttg ggctcaaccg
     101  tgagaggatt ggctggtaga ggagtggtct atattcccaa ggattgccag
     151  gcaaacagat acttgggcac cctaaacata cgtgatatga tttcagattt
     201  taagggtgtc cagtatgaaa aatggataac tgcaggatta gtcatgccta
     251  ctttcaagat agtcgttagg ctacctgcaa atgcttttac tgggttgaca
     301  tgggtgatga gttttgatgc ttataaccgg ataactagta gaattactgc
     351  tagtgcagat cctgtataca ccctatcagt cccacattgg cttatccacc
     401  ataagttggg cacgttctca tgtgagatag actatggaga attgtgtggt
     451  catgccatgt ggtttaaatc cacaacattt gaatctccta ggttgcattt
     501  cacgtgttta acgggcaaca acaaggaact ggcggcagac tggcaagctg
     551  tcgtagagtt atatgctgaa ttggaagagg ccacttcttt tcttgggaaa
     601  ccaaccttgg tttttgaccc aggagttttt aatggcaaat ttcaatttct
     651  gacttgccct cccatattct ttgatctaac agccgtcacg gctcttaaga
     701  gtgctgggct aacattggga caagttccaa tggttggcac aaccaaagtt
     751  tataatttaa acagcactct tgtgagttgt gttctaggta tgggaggtac
     801  tattagagga aaggtacaca tttgtgcgcc aattttctat agtattgttt
     851  tgtgggttgt tagtgagtgg aacgggacca ctatggactg gaacgaactt
     901  ttcaagtatc ccggggtgta tgtggaagag gatggaagct ttgaagttaa
     951  aattcgttct ccatatcacc gaacgcctgc tagattgctt gctggtcaaa
    1001  gtcagaggga catgagctct ctaaactttt atgcaatagc aggacctatc
    1051  gctccatcgg gtgagaccgc acaacttcct attgttgtac agattaatga
    1101  gattgtgcgc ccagatctct ctataccgag ctttgaggat gactattttg
    1151  tgtgggtgga tttttctgaa ttcactcttg acaaagaaga aattgagatt
    1201  ggctctcgtt tctttgattt cacctcaagc acttgtaggg tatctatggg
    1251  agaaaatccg tttgctgcaa tgattgcctg ccatggattg cacagtggtg
    1301  ttttagacct taagttccaa tggagtttga gcaccgaatt tggcaagagc
    1351  agtgggagcg ttactgtcac aaagctggtt ggcgataaag ccatgggtct
    1401  ggacgggcct tcacaagttt ttgccatcca aaaactagag ggagttgcag
    1451  aattgttggt tgggaatttt gcaggagcaa acccgaatac ccatttctct
    1501  ctctatagtc ggtggatggc aattaagctg gatcaagcaa agagtattaa
    1551  agtactccgc gtcttgtgta agcctcgccc aggtttcagt ttttatggaa
    1601  gaaccagctt cccagtctag ggtttctgac tttaaaagac ccaggtgtac
    1651  atacaagttt tgttagttgt gtgtattatt ttgtgttgta atttgcttta
    1701  acttgtttac tgctttggtg tgtttttctt catgctttta gtggcgacag
    1751  tgtgttgttt