Sequence of DPV Southern tomato virus
Southern tomato virus isolate Mexico-1, complete genome.
ACC No: EF442780
Dated: 2009-11-25 | Length: 3437 | CRC: -1156238779
ID EF442780; SV 1; linear; genomic RNA; STD; VRL; 3437 BP.
XX
AC EF442780;
XX
DT 29-OCT-2007 (Rel. 93, Created)
DT 25-NOV-2009 (Rel. 102, Last updated, Version 5)
XX
DE Southern tomato virus isolate Mexico-1, complete genome.
XX
KW .
XX
OS Southern tomato virus
OC Viruses; dsRNA viruses.
XX
RN [1]
RP 1-3437
RX DOI; 10.1016/j.virusres.2008.11.018.
RX PUBMED; 19118586.
RA Sabanadzovic S., Valverde R.A., Brown J.K., Martin R.R., Tzanetakis I.E.;
RT "Southern tomato virus: The link between the families Totiviridae and
RT Partitiviridae";
RL Virus Res. 140(1-2):130-137(2009).
XX
RN [2]
RP 1-3437
RA Tzanetakis I.E.;
RT ;
RL Submitted (16-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL Botany and Plant Pathology & HCRL, Oregon State University and USDA-ARS,
RL 3420 Orchard Ave, Corvallis, OR 97331, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3437
FT /organism="Southern tomato virus"
FT /host="tomato"
FT /isolate="Mexico-1"
FT /mol_type="genomic RNA"
FT /country="Mexico"
FT /note="isolated from a plant showing severe stunting
FT symptoms"
FT /db_xref="taxon:591166"
FT 5'UTR 1. .137
FT CDS join(138. .983,985. .3327)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="fusion protein p122"
FT /note="probably expressed as a fusion with the coat protein
FT after a +1 ribosomal frameshift"
FT /db_xref="GOA:A8R3Y5"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A8R3Y5"
FT /protein_id="ABO36238.1"
FT /translation="MAGVGGSAAGRVPNAANVPLTAKEKERTVMREIVEIGETFVELGI
FT DKRYFQRTTYVSHMLLPNQYFKLLKQFKGKTAEELDLALGAAVAHGVLRSMRGITFKKF
FT FDFLNWVKTKEGKDALGETMYAQKLEQKGRGDFSIAEVALLHCFETQRNDMLRDEKDVR
FT LKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLYQQFNP
FT DKVTAGAKPTRKQVKEAFDMYAEFVAKTNRLEFLKHGNVKDELQAFINAKILGYEQLGD
FT KGRVVILGVSWQQWVLRWIMKWNQRTRKRLLKNLPVGKLRRGKEMTPCRPLSEIIPMER
FT LEEKRTLQYKLPPQLSRATEVEAEAVSLLYPNARIEVEVRPIGRDTRAIPFSRSRWEVG
FT VRKVIGGGEVLNWDIDGNKYRGGGCFADAIKLLAGATQRPPQRLLEDCYTITTAREALG
FT LPSDLAVPSGKGSCHVRNYNDDATSGPFLWSFGIKKKYGLDKLLQSLMEDIYCHYSISE
FT ATDRALPYFAARVGFRSKLLTMGEAVKKFTECAPMGRCVMMLDALEQFASAPLYNVLSK
FT YTAERSRGQTSFRNTVVRASSDWMHFWDEVKEAAVCVELDWSKFDRERPSEDLDFMIKV
FT ICSCFRPKDEVEAKLLRGYGVCMRRALVERRLITDDGGVIHIDGMVPSGSLWTGWLDTA
FT LNILYIKSVLRSIDILEEEAVPKCAGDDNLTVFSKDPGDEVLEEMRVKLNDYFRAGIKK
FT EDFIITRPPFHVRTFQAVFKEGTDLSKGTSKIMKKAYWREFEDELRIDQEKGLSHRWEY
FT RFKGAPKFLSCYWLEDGRPIRPSHENLEKLLYPEGVHANIDDYIAAVLSMVVDNPFNHH
FT NINHLKHRYIIANQVKRLSAAGGRCEDILRLARIREREDEEVPVPQIAVWRRVKEYVDL
FT DSYEPAKYYIQDFNAFVSGVTSLYARSSTGGLDAYKVMDLIRGNATIGRGQWGNDVMDW
FT IRFVRDHPATKYLKGAKRFREQHNQEPTTAKPSKDARRAIKLLRNSLINEAYADSNSFA
FT ISISERLRRKKPTR"
FT CDS 138. .1271
FT /codon_start=1
FT /product="putative coat protein p42"
FT /db_xref="GOA:A8R3Y6"
FT /db_xref="UniProtKB/TrEMBL:A8R3Y6"
FT /protein_id="ABO36237.1"
FT /translation="MAGVGGSAAGRVPNAANVPLTAKEKERTVMREIVEIGETFVELGI
FT DKRYFQRTTYVSHMLLPNQYFKLLKQFKGKTAEELDLALGAAVAHGVLRSMRGITFKKF
FT FDFLNWVKTKEGKDALGETMYAQKLEQKGRGDFSIAEVALLHCFETQRNDMLRDEKDVR
FT LKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLYQQFNP
FT DKVTAGAKPTRKQVKEAFDMYAEFVAKTNRLEFLKHGNVKDELQAFINAKILGYEQLGD
FT KGKSRYLRRQLAAMGVEMDHEVESEDEEEAAEEPAGGEAEEGEGDDPLQATVGDNPDGE
FT ARGEEDTAVQVASPAVTRNRGRGRGRVTPLSQRKDRG"
FT 3'UTR 3338. .3437
XX
SQ Sequence 3437 BP; 917 A; 653 C; 1009 G; 858 T; 0 other;
ef442780 Length: 3437 25-NOV-2009 Type: N Check: 3741 ..
1 gataaattta gtaagctacc tagcggaatt aagaactttc acaaaagggt
51 gaggtcattc acgatttact gtgaaacatc cagtgagagt cagatttctc
101 gtcgttgctt ccgttgcctc agtttagata ttccaatatg gctggtgtcg
151 gaggttccgc ggcggggcgt gttccaaacg ctgccaacgt tcctcttacg
201 gcgaaggaga aggagaggac agtgatgagg gagatagttg agatagggga
251 gaccttcgtc gagttgggta tcgacaagcg ctactttcag agaacaactt
301 acgtctccca catgctacta cctaatcagt acttcaagtt gctcaagcag
351 ttcaaaggga agactgctga ggagttagat ttagcgttgg gggccgccgt
401 cgctcatgga gtgttgagga gcatgcgggg cataactttc aagaagttct
451 ttgacttctt gaactgggtt aagacgaagg agggaaagga tgcactgggc
501 gagacgatgt atgctcagaa gttggagcag aaggggaggg gtgattttag
551 tattgctgag gtggcgctgc tgcattgctt tgagactcag aggaatgaca
601 tgttaaggga tgagaaagac gtgcgtctca aagccgagga ggagatcgct
651 gatctgcagc gtaagattgt caagcgaaga gagaagctcg aggaggactt
701 gatcgcaacc aagtccaatt atgagcctgt tagccggtat gtggggttga
751 gtgactacga gttgaactgc aagtgttggt ctctttacca gcagttcaac
801 cctgataagg tgacagcagg agcgaagcct actaggaagc aagtcaagga
851 ggccttcgac atgtacgcgg aattcgtcgc caagacgaat aggttagagt
901 ttttgaagca cgggaatgtg aaggatgagc tccaggcctt cattaatgcc
951 aagatattgg gttatgagca attaggagat aaggggaaga gtcgttatct
1001 taggcgtcag ctggcagcaa tgggtgttga gatggatcat gaagtggaat
1051 cagaggacga ggaagaggct gctgaagaac ctgccggtgg ggaagctgag
1101 gagggggaag gagatgaccc cttgcaggcc actgtcggag ataatcccga
1151 tggagaggct agaggagaag aggacactgc agtacaagtt gcctccccag
1201 ctgtcacgcg caacagaggt agaggcagag gccgtgtcac tcctctatcc
1251 caacgcaagg atagaggttg aggtccgccc tattgggcgg gacactaggg
1301 ctattccatt ctcgcggtca cggtgggagg tgggagtccg taaggttatc
1351 ggaggggggg aagtcttgaa ttgggatatt gatggtaaca agtacagggg
1401 tggtggttgt ttcgctgatg caatcaaact ccttgctggt gctactcaac
1451 gtccccccca aagattactg gaagactgtt acacaatcac tacagcgcgg
1501 gaggccctag ggttaccttc agatctggcg gtcccgagtg gaaagggaag
1551 ttgccatgtt aggaattaca atgatgatgc tacaagtggg ccgtttcttt
1601 ggtctttcgg aataaagaag aagtatgggt tagataagct tttgcagagt
1651 ctgatggagg atatctactg tcattattct atatctgaag ctactgatag
1701 ggcgttgcca tattttgctg caagggtggg gttccggtct aagctcctca
1751 ctatgggtga ggcggttaag aagtttacag agtgtgctcc tatgggtcgt
1801 tgtgtaatga tgttggatgc tctcgaacaa tttgcgtctg cgccgctata
1851 taacgttctc tctaaatata ctgcggagag atcaagaggg cagacttcct
1901 ttaggaacac tgttgttcga gcgtcgtctg actggatgca tttttgggat
1951 gaggtgaaag aggcagctgt ctgtgtagaa ttggattgga gtaaattcga
2001 tagggaacgt ccttccgaag acttggattt catgattaag gtgatctgtt
2051 cttgtttcag accaaaagat gaggtggagg ctaaactgtt gaggggctat
2101 ggtgtctgta tgagaagggc tctggtggaa aggagattga taactgatga
2151 tggcggggtt atccatattg acgggatggt accaagtggg tcactctgga
2201 ctggatggtt ggacacggct ttaaacatct tgtatattaa gtccgttctt
2251 cggtctattg atatattgga ggaggaggcg gtcccgaagt gcgccgggga
2301 tgacaatcta acggtcttca gtaaggatcc tggagatgaa gtgctcgaag
2351 aaatgagggt taagctgaat gattatttta gggctgggat taagaaagag
2401 gacttcatca ttacccggcc tcccttccat gtgaggactt tccaggcggt
2451 cttcaaggaa ggaaccgacc tatcgaaggg gacatcgaag ataatgaaga
2501 aggcttattg gcgtgagttt gaagatgaat tgaggatcga ccaggagaag
2551 ggcttgtcac ataggtggga gtacaggttt aaaggggctc ccaaatttct
2601 ttcctgttat tggttagagg atggaaggcc cataaggcca tctcacgaga
2651 acttggagaa gctgctctat ccagaagggg ttcatgcaaa tattgacgat
2701 tatatcgcag cagttttatc catggttgta gacaatccat tcaatcacca
2751 caatattaac catctcaagc acagatacat catagccaat caggttaaga
2801 ggctgtcagc agcaggcggg agatgcgagg acatcctccg attggcgagg
2851 attagggaac gtgaagatga agaggtacct gtcccacaaa ttgctgtatg
2901 gcgcagggtg aaggaatatg tcgatttgga cagctacgag ccagccaagt
2951 actacatcca ggatttcaac gcatttgtct caggcgtcac ctccctatat
3001 gccaggtctt ccacaggcgg tcttgatgca tacaaggtca tggatctgat
3051 caggggtaat gctacaatcg gaagaggaca gtggggtaat gacgtcatgg
3101 attggatcag attcgttcgg gaccatccag caactaagta cctcaaagga
3151 gcgaaacgat tcagggaaca gcataatcaa gaacctacga cagccaaacc
3201 atcgaaggat gcgagacgag ccatcaagtt actgcgtaat agtctcatca
3251 atgaggccta cgccgactcc aacagctttg ccatttccat atccgaacgt
3301 ctgagacgga agaagccaac tagataggat ttaattttat gttttgttat
3351 ttatatctga ctctcattgt aaatctactt tattaaagat gtcgcactcg
3401 gcagttctta atgctgttat tagagtagcg cgtcttc