Sequence of DPV Cucurbit aphid-borne yellows virus
Cucurbit aphid-borne yellows virus isolate Hubei RdRp and coat protein genes, partial cds.
ACC No: EF488996
Dated: 2008-05-29 | Length: 1360 | CRC: -2080925334
ID EF488996; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
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AC EF488996;
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DT 01-MAR-2008 (Rel. 95, Created)
DT 29-MAY-2008 (Rel. 95, Last updated, Version 2)
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DE Cucurbit aphid-borne yellows virus isolate Hubei RdRp and coat protein
DE genes, partial cds.
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KW .
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OS Cucurbit aphid-borne yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-1360
RX PUBMED; 18414972.
RA Xiang H.Y., Shang Q.X., Han C.G., Li D.W., Yu J.L.;
RT "Complete sequence analysis reveals two distinct poleroviruses infecting
RT cucurbits in China";
RL Arch. Virol. 153(6):1155-1160(2008).
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RN [2]
RP 1-1360
RA Han C.;
RT ;
RL Submitted (11-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL Road, Handian District, Beijing 100094, China
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FH Key Location/Qualifiers
FH
FT source 1. .1360
FT /organism="Cucurbit aphid-borne yellows virus"
FT /specific_host="cucurbit"
FT /isolate="Hubei"
FT /mol_type="genomic RNA"
FT /country="China"
FT /virion
FT /db_xref="taxon:91753"
FT CDS <1. .576
FT /codon_start=1
FT /product="RdRp"
FT /protein_id="ABS18238.1"
FT /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSD
FT GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAIAMGDDALESACSNLERYKS
FT LGFKVEESSKLEFCSHIFEKEDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFS
FT ILNELRSDPSLVETLHQWLVLPVQPQKI"
FT misc_feature 577. .775
FT /note="intergenic NCR"
FT CDS 776. .>1360
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ABS18239.1"
FT /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGSSRGRRQRRN
FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW
FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
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SQ Sequence 1360 BP; 372 A; 337 C; 337 G; 314 T; 0 other;
ef488996 Length: 1360 29-MAY-2008 Type: N Check: 528 ..
1 agcgtttcgg actggcttct tgaagatgat atggaagtcc gaaaccgctt
51 gacgctagat ttaaatgaaa ccacgcgccg attacgagca gcgtggttac
101 attgcatatc aaacagcgtc ctctgccttt ctgatggaac attattagcg
151 cagagagtcc caggcgtaca gaagagtggc agctacaata cgtcatcgag
201 taattcccgt attcgggtga tggctgccta ccactgcggc gcggaatggg
251 caatagcgat gggcgatgac gccctagagt cagcttgctc gaacctcgag
301 cgttataaat cgctcggttt taaagtcgag gagtcctcaa aactggaatt
351 ctgttctcac atctttgaga aggaggacct cgccattccg gtcaacaagg
401 ccaaaatgct ttacaagctc atacatgggt atgaaccgga atgcggcaat
451 gtggaagtgc tgatcaatta tttggccgcc tgtttctcaa ttctaaatga
501 gttgcggtcc gatccttccc ttgtcgaaac tctccaccag tggctggtcc
551 ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca
601 agcacacacg agttgcaagc attggaagta taagtctcgt taccaagagt
651 ccacacaata gattacaaat ttctcgcagg attttctagc ggtctattgt
701 ctgcagtgcc agttacggta ataggactct attttgtcta cctaaagatt
751 tcagcacacg tgcgatcaat tgttaatgaa tacggccgtg gctagaaatc
801 aaaatgcagg gaggcggagg cgaagaaatc agcgctctat acggcgcgac
851 cgcgtggttg tggtcaaccc ctctggggga tcatcacgcg gaagacgaca
901 acgaagaaac cgccgacgcc ctaatcgagg aggcagagct agaggaagga
951 gcccaggcga aacattcgta ttttcaaagg acaatctcac gggcagttcc
1001 tcaggaagta tcaccttcgg gccgtctcta tcagagagcc cagcattcag
1051 ctctggaata ctcaaggcct accatgaata taagatcatc atggtccagc
1101 tggagttcat ctccgaggcc tcttccacct cctcgggctc catctcttat
1151 gagttggacc cccactgcaa gcttagctcc ctccaatcca cgattaataa
1201 atttggaatc accaagaatg gattgcgacg ttggacagct aagcagatca
1251 acgggatgga atggcatgac gcaactgagg accaattcaa gatcctctat
1301 aaagggaacg gatcttcctc ggttgcaggc agcttcagga tcaccatcaa
1351 gtgccaggtc