Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate tajz5-06 polyprotein gene, partial cds.

ACC No: EF490556

Dated: 2010-12-02 | Length: 1126 | CRC: -1572705694

                
ID   EF490556; SV 1; linear; genomic RNA; STD; VRL; 1126 BP.
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AC   EF490556;
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DT   01-DEC-2010 (Rel. 107, Created)
DT   02-DEC-2010 (Rel. 107, Last updated, Version 2)
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DE   Turnip mosaic virus isolate tajz5-06 polyprotein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1126
RA   Liu J., Gao R., Wang H., Zhu X., Yu X., Li X.;
RT   "3'- terminal genomic sequence of Turnip mosaic virus";
RL   Unpublished.
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RN   [2]
RP   1-1126
RA   Liu J., Gao R., Wang H., Zhu X., Yu X., Li X.;
RT   ;
RL   Submitted (13-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1126
FT                   /organism="Turnip mosaic virus"
FT                   /host="chinese cabbage"
FT                   /isolate="tajz5-06"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and CP"
FT                   /protein_id="ABS20030.1"
FT                   /translation="IFEDYENGAEACVYHQAGETLDAGLTDEQKQAEKEKKEREKAEKE
FT                   RERQKQLALKKGKDVAQEEGIRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNL
FT                   DHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSP
FT                   NINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYG
FT                   LQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVE
FT                   NTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .48
FT                   /product="polymerase"
FT   mat_peptide     49. .912
FT                   /product="coat protein"
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SQ   Sequence 1126 BP; 343 A; 218 C; 303 G; 262 T; 0 other;

ef490556 Length: 1126  02-DEC-2010  Type: N  Check: 9328  ..

       1  atcttcgaag attacgaaaa tggcgctgag gcttgtgttt atcaccaggc
      51  aggtgaaacg cttgatgcag gtttgacgga cgagcaaaag caggcggaga
     101  aggagaagaa ggagagagag aaggcggaaa aggaacgaga gaggcagaag
     151  cagttggcac tcaagaaagg caaggatgtt gcacaagaag agggaatacg
     201  cgacaaggaa gtaaacgctg gaacttctgg aaccttcagt gtacccagac
     251  ttaagagtct gacaagcaag atgcgcgtgc caagatacga gcaaagagtg
     301  gctttaaacc tcgatcatct aatcctatac acgccggagc agacggatct
     351  atccaacaca cgttcaacgc gaaagcagtt tgacacatgg tttgaaggtg
     401  taatggctga ctatgaactg acggaggaca aaatgcaaat cattctcaat
     451  ggtttaatgg tctggtgcat tgagaacgga acctccccga acataaacgg
     501  aatgtgggtg atgatggacg gcgatgatca ggtggaattc ccgatcaaac
     551  cgctcattga ccacgccaaa cccacattta ggcagataat ggcccatttc
     601  agtgacgtag ctgaagcgta cattgaaaag cgtaaccaag accgaccata
     651  catgccacga tatggtcttc agcgcaattt aaccgacatg agcttagctc
     701  gatacgcatt tgatttctat gaaatgactt ctaggactcc aatacgtgcg
     751  agagaggcgc acatccagat gaaagcagca gcactgcgtg gcgcaaataa
     801  taatttgttc ggcttggatg gaaacgtcgg tacaacggta gagaacacgg
     851  agaggcatac gaccgaggac gttaatcgga acatgcataa cttacttggc
     901  gttaaggggt tatgaagttg tgtgctggta gactataagt atttaagttt
     951  actcgttagt attctcgctt atgggaaata tgtaagtttg ttaaagcagc
    1001  cagtgtgact ctgtcatgtg tgttgttgtt actttctata ttttcgccga
    1051  acattttatt ggtgttagcg catgtggtga ggatcgtcct cgattgcctt
    1101  aacatttgat aggaagcaag ggtcga