Sequence of DPV Turnip mosaic virus

Turnip mosaic virus from tobacco polyprotein gene, partial cds.

ACC No: EF491183

Dated: 2007-04-23 | Length: 986 | CRC: -764781096

                
ID   EF491183; SV 1; linear; genomic RNA; STD; VRL; 986 BP.
XX
AC   EF491183;
XX
DT   23-APR-2007 (Rel. 91, Created)
DT   23-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE   Turnip mosaic virus from tobacco polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-986
RA   Zhou L.-F., Liu Y.-H.;
RT   "Coat Protein Gene Sequence Analysis and Identification of Turnip Mosaic
RT   Virus in Chongqing";
RL   Unpublished.
XX
RN   [2]
RP   1-986
RA   Zhou L.-F., Liu Y.-H.;
RT   ;
RL   Submitted (14-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Dept of Plant Protection, Southwest University, No. 1, Tiansheng Road,
RL   Chongqing 400715, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .986
FT                   /organism="Turnip mosaic virus"
FT                   /specific_host="tobacco"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /PCR_primers="fwd_seq: caagcaatctttgaggattatg, rev_seq:
FT                   tattctcgcttatgggaaata"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .921
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein (CP)"
FT                   /protein_id="ABP64696.1"
FT                   /translation="QAIFEDYEDGAEACVYHQAGEALDAGLTDEQKQAEKEKKEREKAE
FT                   KERERQKQLALTKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQGVAL
FT                   NLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGT
FT                   SPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPR
FT                   YGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTT
FT                   VENTERHTTEDVNRNMHNLLGVKGL"
XX
SQ   Sequence 986 BP; 314 A; 199 C; 267 G; 206 T; 0 other;

ef491183 Length: 986  23-APR-2007  Type: N  Check: 8149  ..

       1  caagcaatct ttgaggatta tgaagatggt gctgaggctt gtgtttatca
      51  ccaggcaggt gaagcgcttg atgcaggttt gacggacgag caaaagcagg
     101  cggagaagga gaagaaggag agagagaagg cagaaaagga acgagagagg
     151  cagaagcagt tggcactcac gaaaggcaag gacgttgcac aagaagaggg
     201  aaaacgcgac aaggaagtaa acgctggaac ctctggaacc ttcagtgtac
     251  ccagacttaa gagtctgaca agcaagatgc gcgtgccaag atacgagcaa
     301  ggagtggctt taaacctcga tcatctaatc ctatacacgc cggagcagac
     351  ggatctatcc aacacacgtt caacgcgaaa gcagtttgac acatggtttg
     401  aaggtgtaat ggctgactac gaactgacgg aggacaaaat gcaaatcatt
     451  ctcaatggtt taatggtctg gtgcattgag aacggaacct ccccgaacat
     501  aaacggaatg tgggtgatga tggacggcga tgatcaggtg gaattcccga
     551  tcaaaccgct cattgaccac gccaaaccca catttaggca gataatggcc
     601  catttcagtg acgtagctga agcgtacatt gaaaagcgta accaagaccg
     651  accatacatg ccacgatatg gtcttcagcg caatttaacc gacatgagct
     701  tagctcgata cgcatttgat ttctatgaaa tgacttctag gactccaata
     751  cgtgcgagag aggcacacat ccagatgaaa gcagcagcac tgcgtggcgc
     801  aaataacaat ttgttcggct tggatggaaa cgtcggtaca acggtagaga
     851  acacggagag gcatacgacc gaggacgtta atcggaacat gcataactta
     901  cttggcgtta aggggttatg aagttgtatg ctggtagact ataagtattt
     951  aagtttactc gttagtattc tcgcttatgg gaaata