Sequence of DPV Cereal yellow dwarf virus-RPV
Cereal yellow dwarf virus - RPV isolate 046, complete genome.
ACC No: EF521839
Dated: 2007-04-24 | Length: 5696 | CRC: -223220645
ID EF521839; SV 1; linear; genomic RNA; STD; VRL; 5696 BP.
XX
AC EF521839;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Cereal yellow dwarf virus - RPV isolate 046, complete genome.
XX
KW .
XX
OS Cereal yellow dwarf virus - RPV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5696
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5696
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5696
FT /organism="Cereal yellow dwarf virus - RPV"
FT /isolate="046"
FT /serotype="RPV"
FT /mol_type="genomic RNA"
FT /country="USA:New York"
FT /virion
FT /db_xref="taxon:191217"
FT primer_bind 1. .25
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS 145. .915
FT /codon_start=1
FT /product="P0"
FT /note="ORF0; putative suppressor of gene silencing"
FT /protein_id="ABP68743.1"
FT /translation="MLIAQPCGRVLVFDVASRTPSFFTRYSVELSLRALDPLFTRAVTD
FT FRYTQNEIDLFCVSLGFLLPILLTGESYSWRGHLNLPLSYTELLVRWGLAVGYFPAFSA
FT GGDIRQNPELRIDLSTMSTRSFYEQFLLRSNTSGLAKAIVGQQECFQSGMESFKRFLHY
FT RLTCFESCLPRPRWESPLAPGPYLDRAFEATLLGRMVGHNQLLFTGLSSDITRYYNELV
FT VEGVPVAFWDAAGITLHHAGEEYFSNSYIQKILQ"
FT CDS join(296. .1672,1672. .3531)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68744.1"
FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTLTSPFLTPNYLFDGGSQ
FT WGTSLPSPLVVTFGKTQNSASTCPPCQPALSTSSSYSDLIRVGWQKLSLDSKSAFKAAW
FT SLLKDSCTTASRALKAAFHDLVGKALWLLVLIWTGLLRQLFSAVWSAITNYSLPVCLLI
FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPSTP
FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFHSSRTSGSIPITEFR
FT VIFESKTMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI
FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ
FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFANRGRGAFKSKSGINWEDIEDESG
FT NREGGGVRRNKRSSGKQGYRHPRRRRVPKEDCCSFFAEGTAAPRCIPTHQHNWEQNSYM
FT SNCYCNIPGHGCAYWTITARNHEQHNESAGPEDRYVEDREIDSGSSRESSSEETTRQAW
FT LKETARSWQKFFADIYTWDVSTSKQEVPGFEQVGKFSPQYYPRPRGESEWGKKLCAEHP
FT LLGEKTTGFGWPQVGASAELTSLRLQAARWLERSESAKIPSDAARENVINRTVQAYSNC
FT KTNTPRCTRGELSWETFKIDFLEAIKSLQLDAGVGLPMITAGLPTHRGWVEDPDRLPVL
FT AQLTFDRLLTMSKASLEARSPEQLVKENLCDPIRLFVKQEPHKQSKLDEGRYRLIMSVS
FT LIDQLVARVLFQRQNKSEIALWSAIPSKPGFGLSTEDQVTKFMDVLAGNVGASPEEVCD
FT NWRDLLVPTDCSGFDWSVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSILCL
FT SDGTMLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKY
FT KDLGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAA
FT VSVLHELRHDRELCLKLQEWLISDVTTKLN"
FT CDS 296. .2260
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68745.1"
FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTLTSPFLTPNYLFDGGSQ
FT WGTSLPSPLVVTFGKTQNSASTCPPCQPALSTSSSYSDLIRVGWQKLSLDSKSAFKAAW
FT SLLKDSCTTASRALKAAFHDLVGKALWLLVLIWTGLLRQLFSAVWSAITNYSLPVCLLI
FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPSTP
FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFHSSRTSGSIPITEFR
FT VIFESKTMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI
FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ
FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFANRGRGAFKSKSGINWEDIEDESG
FT NGKAAASAVTNAAAANKVIATPGVAESQKKTAVPSSPKAPQPPAASQPTSTTGSRTPIC
FT PIATATSPDTAVPTGPSQQEIMNNIMNLLVQRIDMSKIEKSIVDQVASQALKKPRVKRG
FT SKKRPAAGKSSSPTSTPGTYQHPNKKSQASNRLGNSPPSTTRAPAANQNGGRNSVPNTL
FT SWVRKLPVSGGPKSGHPLN"
FT CDS 3718. .5529
FT /codon_start=1
FT /transl_except=(pos:4330. .4332,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68746.1"
FT /translation="MSTVVLKSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR
FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPKXVDAEPGPSPGPSPDPPP
FT PPSPSPEPAPAKEERFIVYSGVAHTTISAQSTDDSIIVRDIPDQRFRYVENENFYWFQI
FT AAQWYSNTNTKAVPMFVFPVPIGEWSVEISTEGYQATSSTTDPNKGRIDGLIAYDNSSE
FT GWNIGAGSNVTITNNKADNSWKYGHPDLEINSCHFNQNQVLEKDGIISFHVKATEKEAN
FT FFLVAPPVQKTSKYNYAVSYGAWTDRDMEFGLITVTLDEKRGSGSPTRKSLRAGHAEVT
FT TTTDLVALPEMENFGIETSETPLAPVTSSKAPLPTVSDSESEDDPLSAAPDVGFGGTRL
FT LIDTDIKTIPDPDVADALVNSAHVGVDPWAEVRAFKRAQRPPHGPSSVASGSLSGGSLR
FT GSLRPKTEDPKDSSKSKSRKWSLGSLR"
FT CDS 3718. .4332
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68747.1"
FT /translation="MSTVVLKSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR
FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK"
FT CDS 3743. .4204
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68748.1"
FT /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT SYSSSARPLPQQPAPSLTSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
FT primer_bind complement(5674. .5696)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5696 BP; 1453 A; 1516 C; 1354 G; 1373 T; 0 other;
ef521839 Length: 5696 24-APR-2007 Type: N Check: 9778 ..
1 acaaagatta ccgaggggtg tcttcaacag ttcagacgct cttaagctca
51 ctgttcccgc gctgtttcga cgctttcagc tcacagccca taaaaccccc
101 ctcctcccgc tctagcgatc aacttgcgtg ttcgttatta acgcatgctc
151 atcgcccaac cttgcgggcg agttcttgtg ttcgacgtcg cctcccgcac
201 gccatcgttc ttcactcgtt atagtgttga actctcgctc cgtgctctag
251 atccactctt cacgcgagca gtaacagatt tccgatacac ccaaaatgaa
301 atcgatttat tttgtgtgtc tcttggcttt ctgttgccaa ttctcctcac
351 aggagaatct tactcttggc gcggtcacct taacctcccc ctttcttaca
401 ccgaactact tgttcgatgg gggctcgcag tggggtactt ccctgccttc
451 tccgctggtg gtgacattcg gcaaaaccca gaactccgca tcgacctgtc
501 caccatgtca acccgctctt tctacgagca gttcctactc agatctaata
551 cgagtgggtt ggcaaaagct atcgttggac agcaagagtg ctttcaaagc
601 ggcatggagt cttttaaaag attcctgcac taccgcctca cgtgctttga
651 aagctgcctt ccacgacctc gttgggaaag ccctttggct cctggtcctt
701 atctggacag ggcttttgag gcaactcttc tcggccgtat ggtcggccat
751 aaccaactac tctttaccgg tttgtcttct gatatcacta ggtattataa
801 cgagttggtt gtggaaggcg tgccggtggc tttttgggac gctgccggca
851 ttactttgca tcacgctggt gaagaatatt tttcgaattc ttacattcaa
901 aagattcttc aatgagaaaa ctgtctcagg ttatgacagt tattcgattc
951 ccagcacccc tccgaagcgg agcgtcatca tgatgcgacg ccaaaataag
1001 gagcacattg gatatgcgaa ctgtattcgt cttttcgacg gacggaacgc
1051 aattgtcaca gttgctcaca atatagagga gggttgctct ttccattcct
1101 cacggactag tggttccatc ccaatcactg aatttcgcgt tatctttgaa
1151 agcaaaacca tggatatcgc cattctggtg ggacccatca attgggaatc
1201 gattctcgga tgcaaaggag tccactttac caccgctgac cgcttggcag
1251 aatgtccagc ggctctttat cttcttgata gcgatggtca gtggcgctca
1301 aactcggcga agatttgtgg tcatttcgac aacttcgccc aagtcttgtc
1351 caacactaaa gtcggtcact ccggtgccgg ttatttctat ggcaagactc
1401 tcgttggcct ccataaaggc catcctggca aagatttcaa ttttaatctg
1451 atggctcctt tgccaggaat acccggcttg acctccccgc agtacgtcgt
1501 ggaatccgac cccccccagg gattggtttt ccccgaagaa gtcactgaat
1551 caatcgaaac cgcgattaag gaggcaacaa tgtacaagaa tgtcttcgcc
1601 aatagaggac gtggcgcttt taaatctaaa agcggcatca actgggaaga
1651 catcgaagac gagtcgggaa acgggaaggc ggcggcgtcc gccgtaacaa
1701 acgcagcagc ggcaaacaag gttatcgcca cccccggcgt cgccgagtcc
1751 caaaagaaga ctgctgttcc ttcttcgccg aaggcaccgc agccccccgc
1801 tgcatcccaa cccaccagca caactgggag cagaactcct atatgtccaa
1851 ttgctactgc aacatccccg gacacggctg tgcctactgg accatcacag
1901 caagaaatca tgaacaacat aatgaatctg ctggtccaga ggatcgatat
1951 gtcgaagatc gagaaatcga tagtggatca agtcgcgagt caagctctga
2001 agaaaccacg cgtcaagcgt ggctcaaaga aacggcccgc agctggcaaa
2051 agttcttcgc cgacatctac acctgggacg tatcaacatc caaacaagaa
2101 gtcccaggct tcgaacaggt tgggaaattc tccccccagt actacccgcg
2151 cccccgcggc gaatcagaat gggggaagaa actctgtgcc gaacaccctc
2201 tcttgggtga gaaaactacc ggtttcgggt ggccccaagt cggggcatcc
2251 gctgaactga catctcttcg gctgcaagca gctcgctggc tcgaacgttc
2301 cgagtcagct aaaattccat cagatgctgc tagagagaac gtgatcaatc
2351 gcaccgtaca ggcgtactcg aattgcaaaa ccaatacgcc gaggtgcaca
2401 cgaggtgagt taagttggga aacgttcaaa attgacttcc ttgaagccat
2451 caaatcgctc caacttgacg ctggcgtcgg attaccgatg atcaccgcgg
2501 ggctccccac ccatcgtggg tgggttgaag acccagatcg tttgccagtg
2551 ttagctcagc ttacctttga ccgcctactt acgatgtcaa aggcaagctt
2601 ggaagctcgc tccccggagc aactcgtgaa ggagaatctc tgtgatccta
2651 ttcgtctctt tgtaaaacaa gagccacata aacagagtaa gcttgatgag
2701 ggacgttacc gcctcatcat gtcagtctcc ttgattgatc aattggtagc
2751 ccgggttttg tttcaaagac aaaacaaatc cgaaatcgcg ttgtggagcg
2801 cgattccgtc aaaacccggt tttggattat ccaccgagga ccaagttaca
2851 aaattcatgg atgtcctcgc cgggaacgtt ggtgcgtctc ccgaagaggt
2901 ctgcgacaat tggcgcgacc tgttggttcc cacggactgt tccggtttcg
2951 actggtcagt ctccgattgg atgctcgcgg atgacatgga ggtgagaaat
3001 cgcctaacaa tcgactgcaa cgagctcacc agacacctta gggctgtttg
3051 gcttcagggc atatcaaact cgattttatg cctgtcggat ggaaccatgt
3101 tagctcaacg agtacccggc gtgcagaaaa gtggttcgta caacacttcg
3151 tccacaaact cacgcgttcg ggtcatggct gcctatcact gtggcgcctc
3201 gtgggctatc gctatgggtg atgatgccct ggaagctcca gacacagact
3251 tgtcaaaata taaagatctg ggcttcaaag tcgaggttag cggagagttg
3301 gaattctgct cgcacatttt caagacccct aacctcgcca ttccggttaa
3351 tgaaaacaaa atgttgtacc gcttgatcca cgggtacaat ccggaatgtg
3401 gcaattttga ggtggttcaa aactatctca atgcagctgt ctcagtgctg
3451 catgagctcc gacatgatcg ggagctttgc ctaaaactcc aggagtggtt
3501 gatttctgac gtcaccacaa aactaaactg agcaccaaaa ctagccggac
3551 aaacgtaagt tgcaagtgcc ggaagtcaag tcttacacat aagcccaaca
3601 ttgattttca tttgttagcg ggatttgccc ttggatttat atcctcaatc
3651 cccatttcag ttgttggtgt ttatctagtc taccttaagg tttcgaccca
3701 cattcgagaa attgttaatg agtacggtcg tccttaaatc caatggcaat
3751 ggttcgcgca gacgcagaca gagagtcgct cggcgaaggc ctgctgcaag
3801 aacgcagcca gtggttgtgg tcacttccaa cggcccagcc aggcgcggaa
3851 gacgccgacg accagttggt cctcggcgag gaagaactcc aagatctgga
3901 ggaggaagcc gtggcgagac attcgttttc tcaaaggatt cactcgcggg
3951 caactcctct ggaagtatca ccttcgggcc gtctctatca gagtatccgg
4001 cattccagaa tggagtactc aaggcctacc atgaatataa gatcacaaat
4051 tgtgtcttac agttcgtcag cgaggcctct tccacagcag ccggctccat
4101 ctcttacgag ttggaccccc attgcaaagc atcttcactc gcatcaacga
4151 tcaataagtt cacaatcacc aaaactggtg cgcggagctt cccagcgaag
4201 atgatcaacg ggttagagtg gcacccctca gatgaggatc agttccgaat
4251 tctttacaaa gggaacggtg cttcttctgt ggctgggtct tttaagatca
4301 ctcttagagt ccagctacaa aacccaaaat aggtagacgc ggaacccggt
4351 cccagtccag gaccatcacc cgaccccccc cccccacctt caccgtcccc
4401 agaacctgcc cctgctaagg aggaacgatt tatcgtctat tcaggggtgg
4451 ctcacacaac catcagtgct caaagcactg atgattctat catagttaga
4501 gatatcccag accaacggtt tagatacgtt gagaacgaaa acttctactg
4551 gtttcagata gctgctcaat ggtactcaaa taccaacaca aaagcagttc
4601 cgatgtttgt ctttccagtc cccatcgggg aatggtcagt cgaaatatca
4651 actgagggat atcaagctac gtctagtacc acggatccta acaagggccg
4701 cattgacggg ctcatagctt atgataactc aagtgaaggg tggaatatcg
4751 gggctggaag taacgttacc atcacgaaca acaaagctga caatagttgg
4801 aaatacggtc atcccgatct ggaaatcaac tcttgtcact tcaaccagaa
4851 tcaagttttg gagaaagatg gtattatttc tttccatgtc aaggccacag
4901 agaaggaggc taatttcttc ttagtcgccc ctccagtcca gaaaacctcg
4951 aagtataact acgctgtctc atatggagcg tggacggaca gagacatgga
5001 attcggattg attacagtca cgttagatga gaaacgtggc tcgggttccc
5051 ccactcgcaa aagcttacgc gctggacacg cggaagtaac gaccaccact
5101 gatttggtgg cgttaccgga gatggaaaac ttcggtatag aaacatctga
5151 aaccccgtta gctccggtca ccagctcaaa agcaccgttg ccaaccgtct
5201 cggattcgga gtcagaagac gatccgttat cagccgcacc agatgtaggc
5251 tttggcggaa ctcgtctttt aattgatact gatatcaaaa caatacccga
5301 tccggacgtt gctgatgccc tcgtgaacag cgctcacgtg ggtgtggatc
5351 catgggcaga agttcgagcg tttaagagag ctcagcgtcc tccccatgga
5401 ccgtcatcgg ttgctagcgg cagcctctct ggaggttcgc tgcgtggaag
5451 cctcagaccg aaaactgagg atccgaaaga ttcatccaaa tctaaatcta
5501 gaaaatggtc tctcggaagt ctgcgatgac tataaactaa ggcgaaggaa
5551 aatgccttaa atcacccgtc aagcgacgtt aaaaggagga ttaagaccct
5601 ccccccttcc tggttcaaca accttgttct aggctaggtt cttgtcttta
5651 aaagaagaag ctacttgaga gattccgatc tcttgggagc tttggt