Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV isolate 052, complete genome.
ACC No: EF521841
Dated: 2007-04-24 | Length: 5673 | CRC: 2114367903
ID EF521841; SV 1; linear; genomic RNA; STD; VRL; 5673 BP.
XX
AC EF521841;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Barley yellow dwarf virus - PAV isolate 052, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5673
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5673
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5673
FT /organism="Barley yellow dwarf virus - PAV"
FT /isolate="052"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="Sweden"
FT /virion
FT /db_xref="taxon:12040"
FT primer_bind 1. .19
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS join(142. .1158,1158. .2744)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68755.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA
FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEELFSGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSISGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYSETPITNHSRM
FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 142. .1161
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68756.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2858. .4810
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68757.1"
FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT
FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETR
FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR
FT SKHILVSERYVEPLPTIIDQGLCDVKTPEQEQTLVDEEDRQTVSTEPDIALQEYEAATA
FT EIPDAEEDVLPSREQLSSKPLDTSGNIIPKPKEPEVLGTYQGQNIYPEDVPPLARQRLR
FT EAAKAPSTLLYERTPKKSSNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK
FT SLGLTAAKEYKAQFQ"
FT CDS 2858. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68758.1"
FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68759.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL
FT RPALSLLNSTPRASNQPWVATLIPSPSARPPPRSSGQRQLTGRNSRNQR"
FT CDS 4917. .5045
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABP68760.1"
FT /translation="MEDLHVIAACMLALTVLTGLGAVVGCCVGCFRSPFPSPRPSL"
FT primer_bind complement(5650. .5673)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5673 BP; 1662 A; 1356 C; 1392 G; 1263 T; 0 other;
ef521841 Length: 5673 24-APR-2007 Type: N Check: 1566 ..
1 agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta
51 cacacccgtt tcgtgttcgg gaagtagttg cgaaaacggt ccccttattg
101 cctgacaagc taagggccac ccttctaacc ccaccgccac catgtttttc
151 gaaatactaa taggagctag cgctaaggcg gttaaagact ttattagcca
201 ttgttactct agattaaaat ctatatattt ttcatttaaa cgatggctaa
251 tggagatatc tgggcaattt aaggcccatg acgcctttgt caacatgtgc
301 tttgggcaca tggctgacat tgaggacttc gaggcggaac tcgctgagga
351 gttcgccgag agggaagatg aggtggaaga ggcgaggagc ctcttgaaac
401 tgctggtcgc ccaaaaatct aaaactgggg tgaccgaggc ttggaccgac
451 ttctttacga agtcgagagg tggcgtttat gcgccacttt cctgcgagcc
501 taccaggcag gaactagaag tcaagagcga gaagctcgaa aaacttctag
551 aagaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag
651 gctggtgaag gacgtcaagg acgaggcgaa ggacaatgcc agagctgctg
701 ccaagattgg agcagaaatg ttcgcccccg ttgacgtgca ggacctctac
751 agctttacag aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaggagaaa aacggcgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgaggtc tatcaaggac accgccgaag ccagggacgc cgcctccacc
901 tggataacag agacagttaa gctgaagaac tcaacgctta acgcagatga
951 actgtctctt gccaccatcg cccgctatgt tgaaaacgta ggggacaaat
1001 tcaaactcga cattgcaagc aaaacatatc taaagcaagt cgcatcgatg
1051 tctgtaccaa ttccaactaa caaggacatc aaattaaaga tggtgctaca
1101 gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccatttc
1201 ccatactcgg gctgccagag attgcggtca cagacggagc ccggctccgt
1251 aaggttagta gtaatattag ataccttagc caaacccact taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa cgcgcttgtg gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aagcaatcta ccccccccgc
1401 cctgagcacg acattttcac tgatacgatg gattacttcc agaaatccat
1451 tatagaagag gtgggatact gtaagacata tccagcgcaa ctcctggcta
1501 atagctatag cgcaggaaag agggctatgt atcacaaagc cattgcatcc
1551 ttgaagactg tcccttatca tcagaaggat gccaatgtgc aagctttcct
1601 gaagaaggaa aaacattgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtac aatattatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgccatcgat agtgtgtttg gatcccccac
1751 tgtgctttct ggttatgaca acttcaaaca aggaaggatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcca ttggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatgggatc ttcggagaca gcgaactggc tcttgcactt gaacaccaaa
1951 tcaccaacaa tatcaagatg tttgttgaag acaaaatgct taggtttaag
2001 gtaagaggcc acagaatgtc cggtgacatt aataccagca tgggaaacaa
2051 gctgataatg tgcggcatga tgcacgcata tttcaagaag ctgggtgttg
2101 aagctgagct atgcaataat ggagatgatt gtgtcatcat aactgataga
2151 gcgaatgaag aactcttcag tggaatgtat gaccatttcc tacaatacgg
2201 cttcaacatg gtgaccgaga agccagttta cgaactggaa caactggagt
2251 tttgccagtc aaaaccggtc tctattagtg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct atatgtcggc tgtggctcag tgtggtttag
2401 tgctaaacgc tggggtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaattcatca aaaacgtcat
2501 ttcgtatgga acagatgaga gactacaagg tagacgtacc tattcggaaa
2551 cacctatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagtg tgaaggtgac gactccacat ctgcaatcaa
2701 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca
2751 aatcttagct gggtttggga tagggttcat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcccaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg
3051 tattctcagt tgacaacctt aaagccaact cctccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tactcaagtc
3151 ctaccatcgt tacaagatca caagtatccg agttgagttt aagtcacacg
3201 cgtccgccac tacggccggc gctatcttta ttgaactcga caccgcgtgc
3251 aagcaatcag ccctgggtag ctacattaat tccttcacca tcagcaagac
3301 cgcctccaag gtcttccggt cagaggcaat taacgggaag gaattccagg
3351 aatcaacgat agaccaattt tggatgctct acaaggccaa tggaacaacc
3401 actgacacgg caggacaatt cattatcacg atgagtgtca gtttaatgac
3451 ggccaaatag gtagactcct caacaccgga accgaaacct gcaccagaac
3501 caacaccaac cccacagcct acgccagcac cacagcccgc acctgagcct
3551 actcctgcac ctgtccccaa acgattcttt gagtatatcg gaactccaac
3601 cggtacaatc tcaactagag agaattctga cagcatttct gtcagtaagc
3651 tcggaggaca gtcaatgcag tacattgaga atgagaaatg tgagacaaga
3701 gttatagatt ccttctggag cactaacaac aacgtgtctg ctcaagcagc
3751 cttcgtttat ccagtgccag aaggatcata cagtgtgaac atttcgtgcg
3801 aaggctttca atccgttgac cacattggtg gtaacgaaga tggctactgg
3851 attggtctaa ttgcttactc caattcgtct ggcgacaact ggggtgtagg
3901 taattacaaa ggatgcagtt tcaaaaactt cttggcaacc aacacttgga
3951 gaccaggcca caaagatctc aagttgaatg attgccagtt cacagacgga
4001 caaatagttg aaagggatgc cgtgatgtct tttcacgtag aggccacagg
4051 tactgatgcc tgtttctacc taatggctcc caaaactatg aaaactgaca
4101 aatacaacta tgttgtctct tatggagggt acacaaacaa acgaatggaa
4151 tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 cataactagg catgctgaaa cacccatccg ttctaagcac attcttgtgt
4251 ccgagcggta tgtggaacca ttgcccacca taatcgatca aggcttgtgt
4301 gatgtgaaaa ctcccgagca agaacaaaca ttggtggatg aagaagacag
4351 gcaaactgtt tcgactgaac ctgatatagc actccaggaa tatgaagctg
4401 ccacagctga aatccctgat gctgaagagg atgttttgcc ctctagggaa
4451 caactgtctt ctaagccatt ggacacgtct ggcaatataa tacctaaacc
4501 caaggaacct gaagtacttg gaacatacca gggtcagaat atttaccctg
4551 aagacgtgcc accgctagcg cggcagaggt tacgcgaagc cgcaaaagca
4601 ccctccacgt tgctctatga aagaacgcca aagaagagca gcaacttctt
4651 gactcgtttt gtggaggcga ataggtcccc tactactccc gctgctccta
4701 cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc ggagtacact
4751 agaattagga aatcccttgg gctcacggca gcaaaggaat acaaagcgca
4801 atttcagtga agataacacc actagcacaa ctcggatcct gggaaacagg
4851 cagaacctcg gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gttttgtgtt tggccgatgg aagatctcca cgttatcgcc gcttgtatgc
4951 ttgctctgac cgtgttgaca gggttaggcg ctgtagtcgg ctgctgtgtc
5001 ggctgctttc gatccccctt cccttcccct cgcccttcct tgtaagcaaa
5051 agtttcttgg tctgtgcaag gaacaatcaa aaatatcagg gagctttggc
5101 tcagtgaggg gattaatgac ccccagtaat ggctggtctt ggcggacatg
5151 aataacccgc tataggacaa agtggtaacc gccactgatc aaatggtgaa
5201 catgcttctg tgttgtacac tgccccggag cccaccgggt caacaaggtt
5251 attccaccaa ctcgatgaaa tgagagtgga gtgggcggag tgggtgactt
5301 cgtgatgtac acccgatcgt caggattgaa gacgttaaaa ctcgacgacc
5351 tagtgcaagt cgttaaactg actcgggtgg atacaccaca cccggcccag
5401 catgttggca tacccacgat acgaaacgtg ggtctcttgg agccactacc
5451 tgtgatgcaa ggtagggtat gagtcttagc aagctctgtg ccaggagatg
5501 gacataaacc atagcaatcc aacatgtttc cgcactgggg caaaccacag
5551 gtgaaccgtg ccacgggcct ggttaccgaa aggaaagcca gtatccaaca
5601 cagcaatgtg ttgggggtta cacccttcgg ggtactctta acgctgacac
5651 tcgaaagagc agttcggcaa ccc