Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV isolate 064, complete genome.
ACC No: EF521850
Dated: 2007-04-24 | Length: 5706 | CRC: -1512212565
ID EF521850; SV 1; linear; genomic RNA; STD; VRL; 5706 BP.
XX
AC EF521850;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Barley yellow dwarf virus - PAV isolate 064, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5706
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5706
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5706
FT /organism="Barley yellow dwarf virus - PAV"
FT /specific_host="oat"
FT /isolate="064"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="USA:Alaska"
FT /virion
FT /db_xref="taxon:12040"
FT primer_bind 1. .28
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS join(152. .1171,1171. .2757)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68810.1"
FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD
FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW
FT NDLRSRLKLVKEARDEAKDNIKAASKIGMEFSAPTNIQDLYTFTKVEKVETGLMKEVTK
FT MVQGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV
FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDAQGF
FT LEGLCASSGFESPFSLLGLPEIKVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNA
FT LVAVERRVFTVGKGDKAIYPPHPEHDIFTETMDYFAESIIDKVGYCKTYPAQELALSYS
FT AGKRSQYFKAIESLKKEPYQQKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDSMFGSPTVLSGYDNFTQGRIIASKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGDTELATALEHQLVNNIKMFVEDKMLSFQVRGHRMSGDINTSM
FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITERANEKLFDGMYDHFLKYGFNMVTE
FT APVYELGELEFCQSKPVRIDGKYRMVRRPDCIGKDSCTLLSMLNEADVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITSDNR
FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY"
FT CDS 152. .1174
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68809.1"
FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD
FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW
FT NDLRSRLKLVKEARDEAKDNIKAASKIGMEFSAPTNIQDLYTFTKVEKVETGLMKEVTK
FT MVQGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV
FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDAQGF
FT "
FT CDS 2871. .4823
FT /codon_start=1
FT /transl_except=(pos:3471. .3473,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68813.1"
FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRTGPRRRNGRR
FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF
FT QESTIDQFWLLYKANGTTTDTAGQFIIRINVSMLTPKXVDSSTPEPKPAPEPTPAPQPT
FT PAPQPTPEPTPTPVPKRFFEYVGTPTGVISTRENSDSISVSKLGGQSMQYIENEKCESK
FT VIDSFWSTNNNVSAQAAFVFPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGIGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDGVISFHVDATGT
FT DACFYLAAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTFDESDVEAERIARHSETPAR
FT LNHILVSEAYEEPLPTIIDQGLCDVKTPEQETLEVDEDDKQTVSTEPDIALQEYEAATA
FT EIPDAEEDVLPSKEQLSVKPVDSSGTLLPKPKEPEVLGTYQGMNIYPEDVPPVARQKLR
FT EAAKAPSTMLYDRAPRGTKSILSRFIEGNKSKGTSAAPSVSTYSNMTREQLREYTRIRN
FT SLGITAAKEYKASLQ"
FT CDS 2871. .3473
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68811.1"
FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRTGPRRRNGRR
FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF
FT QESTIDQFWLLYKANGTTTDTAGQFIIRINVSMLTPK"
FT CDS 2914. .3375
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68812.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAQEEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSVPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPPL
FT RRALSLLNSTPRASNQPWVATLIPSPSAKLPPSPSEPRRLMGRNSKNQR"
FT CDS 4953. .5072
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABP68814.1"
FT /translation="MDDLHVIAVCMLAMTTFTAVGVVPGCCIGCIEALCGSKR"
FT primer_bind complement(5683. .5706)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5706 BP; 1671 A; 1395 C; 1358 G; 1282 T; 0 other;
ef521850 Length: 5706 24-APR-2007 Type: N Check: 7325 ..
1 tgaaggttga ccacctacac aaaaagactt tgtgcttgaa gtctacaact
51 cacctgtttt gtattcagga agttgtctgc aacaacggtc aacagtacgt
101 ttgacaccgt actgccccct tccccatccc ttcccccgcc cctctgccaa
151 catgcttctt tttgaacttt tgatcggcgc tagcgtcaaa gctgttaaag
201 acttcatcag ccactgctac tctagactaa aaagcatata ttatgctttc
251 aaaagatggc tgatggagat ctctgggcaa tttaaggccc acgacgcttt
301 tgtcaacatg tgcttcgggc acattgctga catcgaagac ttcgaggcgg
351 aactcgctga agagttcgcc ttgaaggagg atgagatcga ggaggcgaga
401 agcctcatgc gtctgctcac cgcccaaaaa gcaaaaactg gggtggtaga
451 ggcttggacc gacttctttg tgaagtcgag aggcggggtt tatgccccgc
501 tttcctgcga gccttccaaa gcagagcttg aggccaaagc cgacaagctc
551 gaaagactac ttgaggacat gcacaaattt gaggtgcaag cggcaaaaaa
601 atacataaaa gaaaagggcc gcgggttcat caactgctgg aacgaccttc
651 gttccagact caagttagtc aaggaggcaa gagacgaggc caaagacaac
701 atcaaggccg cctccaagat cggcatggaa ttctccgcac caaccaacat
751 ccaggacctc tacaccttca ccaaggttga aaaggtcgag accggcctca
801 tgaaggaggt caccaaaatg gtgcagggag aagaaaccaa gcacatggag
851 ccaataactg aagacatgcg ctccatcaag gacaccgcgg aagaccgaga
901 ggccgcctcc aagtggataa cggaggtggt taaattgaaa aattcaaccc
951 tgtctgccga cgagctgtcc ctggccacca tcgcccgata tgtggaaaat
1001 atcggggaaa aatacaagct cgacattgct tccaaaacgt accttaagca
1051 atgcgcgatg atgtctgtcc caatcccaac acaaaaagac atcaagatga
1101 agatggtgat ccagagccct gcggcacgag ctgcgcgtga gcgcgtagct
1151 gtgcttgatg ctcagggttt ttagaggggc tctgtgcctc ctccggtttt
1201 gaaagtccct tttctctact tggactgccg gagattaagg tcacagacgg
1251 agcccgacta cgtaaggtta gtagtaatat tagataccta tcccagaccc
1301 acctcggctt ggtatataaa gccccaaatg cctccctgca caacgccctg
1351 gttgcagtgg agagaagagt gtttacagta ggaaaggggg acaaagctat
1401 ataccccccc cacccagagc atgacatttt cactgagact atggactact
1451 tcgcagagtc cataattgac aaggtgggat actgtaaaac ataccctgca
1501 caagaattag ctcttagtta tagtgcaggg aagcggtcac aatacttcaa
1551 agccatagag tccctcaaga aggaacctta tcaacaaaag gactctaatg
1601 tgcaggcatt cctcaagaag gagaagcatt ggatgaccaa agccatcgcc
1651 ccgcgcctga tctgcccccg ctctaagcgg tacaatatca tccttggaac
1701 tcgtttgaaa ttcaacgaga agaagatcat gcatgctatc gatagtatgt
1751 ttggatcccc cactgtgctt tctggctatg acaacttcac tcaaggaaga
1801 atcatagcca gcaagtggca aaagtttgca tcacccgttg ctatcggtgt
1851 tgatgctagc cgcttcgacc aacacgtgtc tgagcaggcg cttaagtggg
1901 aacacgggat atacaatggc atatttggcg acactgaatt ggccactgct
1951 ctcgaacacc aacttgtaaa taatatcaaa atgttcgttg aggataagat
2001 gctttcattt caagtgagag gccacagaat gtccggggac ataaatacca
2051 gcatgggaaa caaactgata atgtgtggca tgatgcacgc atacttcaaa
2101 atgctgggtg ttgaagctga actgtgcaac aatggggacg actgtgtcat
2151 catcactgag agagccaatg aaaagctctt tgatggcatg tacgaccact
2201 tcctaaagta cggcttcaac atggtgacgg aagccccagt ttacgaactc
2251 ggggagcttg aattttgtca atcaaaaccc gtcagaatag atggcaaata
2301 caggatggtg aggagaccag actgtattgg gaaagatagt tgcacacttc
2351 tgagcatgtt gaatgaagct gacgttaaga gttacatgtc agctgtggct
2401 cagtgtgggc tcgttttgaa tgcgggtgta cccatcctgg aaagcttcta
2451 ccgctgtttg tacagaagct ctgggtacaa gaaagtaagt gaggaataca
2501 tcaaaaacgt catatcatat ggaacagatg aacgccttca aggtagacgt
2551 accttcaagg agacacctat cacaagcgac aatcgaatgt cgtactggga
2601 atcattcgga gttgacccta agatacaaca actcgtcgag cggtacttcg
2651 acgatcttac ggtaagtgct caactccaga gtgtgaaggt gacatctcca
2701 catctgcaat caatcctcct ctccattccg gagaacaact cgcacaacga
2751 atattgatta ccaaatcttg gcagggtttg gaatagggtt catagtaggt
2801 atcccctgta cattagctct cacgtatttt atttacaata aagtttcaga
2851 cactactaga gaggtagtga atgaattcag taggccgtag aggacctaga
2901 cgagcaaatc aaaatggccc aagaaggcgg agccgtagaa caattcggcc
2951 agtggttgtg gtccaaccca atcgaacagg acccagacga cgaaatggtc
3001 gacgctcagg aagaagaggg ccaaattcta tacctggatc aacaggcagg
3051 actgaggtat tcatattctc agtcgacaac cttaaagcca actcttccgg
3101 gacaatcaaa ttcggtccca gtttatcgca atgcccagcg ctttcagacg
3151 gaatacttaa gtcctaccac cgttacaaga tcacaagtat ccgtgttgag
3201 tttaagtcac acgcgtccgc cactacgtcg ggcgctatct ttgttgaact
3251 cgacaccgcg tgcaagcaat cagccctggg tagctacatt aattccttca
3301 ccatcagcaa aactgcctcc aagtccttca gagccgaggc gattaatggg
3351 aaggaattcc aagaatcaac gatagaccaa ttctggctac tctacaaggc
3401 aaatgggacc actactgaca ccgctggaca gtttatcata aggataaacg
3451 tcagtatgtt aactcccaaa taggtagact cctcaacacc ggaaccgaaa
3501 ccagcaccag aaccaacacc agccccacag cccactccag ccccgcagcc
3551 cacaccagaa ccaactccta cacctgtccc caagagattc tttgaatacg
3601 tcggaacccc aaccggcgtg atttcaacgc gcgaaaactc tgacagcatt
3651 tctgtcagca agcttggtgg acaatccatg cagtatattg agaatgagaa
3701 atgtgaatca aaggttattg attccttctg gagcaccaac aacaacgttt
3751 ccgctcaggc ggcattcgtt tttccagtgc cagaagggtc atacagtgtc
3801 aacatttcgt gtgaaggctt tcaatccgtt gaccacatcg gtggtaacga
3851 ggatggctac tggattgggc tcatcgctta ctccaattca tcaggagaca
3901 actggggaat cggtaattac aaagggtgca gtttcaaaaa tttcttggca
3951 accaacactt ggagacctgg ccacaaagat cttaagttga atgattgcca
4001 gttcacagat ggacaaatag ttgaaaggga tggcgtgata tctttccatg
4051 tagatgcaac aggtactgat gcctgtttct accttgcagc ccccaaaaca
4101 atgaaaactg acaaatacaa ctatgttgtt tcgtatgggg ggtacacgaa
4151 caaacggatg gagttcggta ccatatctgt gacatttgat gaatccgatg
4201 ttgaggcaga acgcattgcc aggcattcag agaccccggc tcgtctaaac
4251 catattttag tatctgaggc atacgaagag ccgttgccca ccataatcga
4301 tcaaggcttg tgtgacgtga aaactcccga gcaagaaact ttagaggtgg
4351 atgaagatga caaacagact gtttcaactg aacctgatat agcattacaa
4401 gaatatgagg ctgctacagc cgaaatacct gatgctgaag aggatgtttt
4451 accctctaag gaacaactgt ctgtcaaacc tgtggactca tccggaacac
4501 tacttccaaa acccaaggaa cctgaagtac ttggaacata tcagggtatg
4551 aatatatacc cagaggatgt accaccggtg gctcgtcaaa agctgcgtga
4601 agcagcaaaa gcaccttcta ccatgctgta cgatcgggcc ccaagaggga
4651 caaaatccat cctgtcccgg tttatagaag gcaataagtc taagggcacc
4701 tctgctgctc cctccgtgtc aacctattct aatatgacaa gggaacagtt
4751 gcgggagtac acccgcatta gaaatagttt aggtatcact gcagcaaaag
4801 aatacaaagc gtctctacag tgaagattaa caccactaac acaagccgaa
4851 tcctgggaaa caggcagaac ttaggttcgt aagctcgggt aactggaagg
4901 tgggctgtca acccaccacc atcttaccgc cgcattgcct tgtgtttggc
4951 cgatggatga tctccatgtc attgctgttt gtatgcttgc catgactact
5001 ttcacagcag tgggagttgt gcctggttgc tgcattggtt gtattgaagc
5051 cctttgtggc agtaaacgct aaatatgtgt ctcggtctgt gcgagatgca
5101 actcaaaaac aagtagggag cgatagctca gtgagaggat taacaaccct
5151 cggtaaaagc tggttctgga ggacatgaat aaccctctat agaacaaagt
5201 ggaggtccac cactgatcaa atgagacagc atgcttctgt gctatacact
5251 gccccagcgc aatctgggta aacaaataaa cactgtccaa cccaatgaaa
5301 cgagggtgga gacagcggag tgggtgactt cgagatgtac acccgaacgt
5351 caggtttgaa gacgttataa aacactcgag atgagaaaca ctcgttaaaa
5401 gttccccggc tgatacaccc agtcggcccg acccgcaggc ataccctcga
5451 tacgaaacga gggttcctag gagccaccac ctgtgatgca aggtggggta
5501 ggagtcttag caagctctgt acctgggaat ggacaaccat agcaatccta
5551 cggcatccgg ggcgcgagct ttccgcacta ggtgaaagcg tgccactggc
5601 ctgttgcaag caatctagct ctgcttgcaa cagtatccct tagaagcaat
5651 tctttggggg gactggatcc tgactgctgg cactcgaaag agcagttcgg
5701 caaccc