Sequence of DPV Maize streak virus
Maize streak virus isolate UHoi-154, complete genome.
ACC No: EF547099
Dated: 2007-11-01 | Length: 2689 | CRC: 1276825888
ID EF547099; SV 1; circular; genomic DNA; STD; VRL; 2689 BP.
XX
AC EF547099;
XX
DT 23-MAY-2007 (Rel. 91, Created)
DT 01-NOV-2007 (Rel. 93, Last updated, Version 2)
XX
DE Maize streak virus isolate UHoi-154, complete genome.
XX
KW .
XX
OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2689
RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L.,
RA Rybicki E.P., Thomson J.A., Varsani A.;
RT "Genetic analysis of maize streak virus isolates from Uganda reveals
RT widespread distribution of a recombinant variant";
RL J. Gen. Virol. 88(11):3154-3165(2007).
XX
RN [2]
RP 1-2689
RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E.,
RA Thomson J., Martin D.;
RT ;
RL Submitted (11-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701,
RL South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2689
FT /organism="Maize streak virus"
FT /isolate="UHoi-154"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:10821"
FT gene join(2688. .2689,1. .304)
FT /gene="MP"
FT CDS join(2688. .2689,1. .304)
FT /codon_start=1
FT /gene="MP"
FT /product="movement protein"
FT /db_xref="UniProtKB/TrEMBL:A5JLB8"
FT /protein_id="ABQ40254.1"
FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT gene 315. .1049
FT /gene="CP"
FT CDS 315. .1049
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:A5JLB9"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProtKB/TrEMBL:A5JLB9"
FT /protein_id="ABQ40252.1"
FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT misc_feature complement(1050. .1201)
FT /note="short intergenic region; SIR"
FT misc_feature complement(1202. .1663)
FT /note="RepB; contains internal stop"
FT gene complement(1558. .2376)
FT /gene="RepA"
FT CDS complement(1558. .2376)
FT /codon_start=1
FT /gene="RepA"
FT /product="RepA"
FT /db_xref="GOA:A5JLD8"
FT /db_xref="UniProtKB/TrEMBL:A5JLD8"
FT /protein_id="ABQ40253.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTTKEEYLSMIQKELPY
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA"
FT misc_feature 2377. .2687
FT /note="long intergenic region; LIR"
XX
SQ Sequence 2689 BP; 677 A; 641 C; 699 G; 672 T; 0 other;
ef547099 Length: 2689 01-NOV-2007 Type: N Check: 2270 ..
1 ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc
51 cggcatccgc aggagtgccg tggagtcgcg taggcgaggt agctattttg
101 agctttgttg cactgatttg cttttacctg ctttaccttt gggtgctgag
151 agaccttatc ttagttctga aggctcgaca aggcagatcc acggaggagc
201 tgatatttgg aggacaagct gtggatagga gcaaccctat ccctaatcta
251 ccagcaccac caagtcaggg caatcccggg ccatttgttc cgggcacggg
301 ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg
351 aattggagta agcgggtgcc taagaagaag ccttcttcag ctgggctgaa
401 gagggcggga agcaaggccg ataggccatc cctccaaatc cagacactcc
451 agcatgctgg gaccaccatg ataactgtcc catccggagg agtatgtgac
501 ctcatcaaca cctatgcccg aggatctgac gagggcaacc gccacaccag
551 cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg
601 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg
651 tatgacacca ctcccggcgg acaagctccg accccgcaaa ctatatttgc
701 ctaccctgac acgctgaaag cgtggccggc cacatggaag gtgagccggg
751 agctgtgtca tcgcttcgtg gtgaaacggc gatggttgtt caacatggag
801 accgacgggc ggattggttc ggacattcct ccctcgaatg caagttggaa
851 gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag
901 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag
951 agaggagcgt tgtacatggt cattgccccc ggcaatggtc ttacatttac
1001 tgcccatggg cagacccgtc tgtactttaa gagtgttggc aaccagtaat
1051 gaataaaaac tcccgtttta ttatatctga tgaatgctga aagcttacat
1101 taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca atacaggggg
1151 gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaga acatcgaaaa
1201 atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga
1251 gaataccatt tctcccccgg cgacataatg taaatgacgc agtttgcctc
1301 gaaatactcc agctgccctg gagtcatttc cttcatccaa tcttcatccg
1351 agttggcgag gattattgta ggcttagact tcttctgcac cttcttcttc
1401 ttaccatact tggggtttac aatgaaatcc ctctgacagc caactaactg
1451 tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga
1501 ttgcgtcttc gttgtatgaa gaccaatcaa cattattttg ccagtaatta
1551 tgaaccccta ggcttctggc ccaagtagat tttcctgttc ttgttgggcc
1601 gacgatgtag aggctctgct ttcttgatct ttcatctgat gactggatac
1651 attatccatc cattggaggt cagaaattgc atcctcgagg gtataacagg
1701 taggttgaag gagcatgtaa gcttcgggac taacctggaa gatgttaggc
1751 tggagccaat cattgattga ctcattacaa agtaaatcag gtgaggattg
1801 cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg
1851 cggagtattc aaaatactgc aattttgtgg accaatcata gggaagctct
1901 ttctggatca tggagaggta ctcttccttg gtagtagagt gtgaaataat
1951 gtctcgcatt atttcatctt tggaaggctt tttttcctta acttctgaat
2001 cagattttcc taggaagggg gacttcctag gaatgaaagt acctctctca
2051 aacatggcca gaggttcctt gaggatgtaa tccctcaccc tgtttactga
2101 cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg
2151 agtccgatat tcttaccggc ttctctgttt gaagcaatgc atgtaaatgc
2201 aaacttccat ctttatgtgc ctcccgggca catagaatgt acttgggaat
2251 ccaacgaaca acgagctccc agatcatctg acaggcgatt tcaggatttt
2301 ctggacactt tggataggtg aggaacgtgt tagcgttccg gtgtgagaac
2351 tgacggttgg atgaggagga ggccatagcc gacgacggag gctgaggctg
2401 agggatggca gactgggagc tccaaactct atagcatacc tgtgcgcctt
2451 cgaaatccgc cgctcccttg tcttatagtg gttgtgtatg ggccggaccg
2501 ggccggccca gcaggaaaag aaggcgcgca ctaatattac cgcgccttct
2551 tttcctgcga gggcccggta gggcccgagc gatttgatgt aaagcctggt
2601 cctgctttgt atgatttatc taaagcagcc caatctaaag aaaccggtcc
2651 cgggcactat aaattgccta acaagtgcga ttcattcat