Sequence of DPV Prunus necrotic ringspot virus

Prunus necrotic ringspot virus isolate NctCl.ear1 coat protein (CP) gene, complete cds.

ACC No: EF565252

Dated: 2008-04-27 | Length: 675 | CRC: 1371582942

                
ID   EF565252; SV 1; linear; genomic RNA; STD; VRL; 675 BP.
XX
AC   EF565252;
XX
DT   27-APR-2008 (Rel. 95, Created)
DT   27-APR-2008 (Rel. 95, Last updated, Version 1)
XX
DE   Prunus necrotic ringspot virus isolate NctCl.ear1 coat protein (CP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Prunus necrotic ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Ilarvirus.
XX
RN   [1]
RP   1-675
RX   PUBMED; 18365129.
RA   Fiore N., Fajardo T.V., Prodan S., Herranz M.C., Aparicio F.,
RA   Montealegre J., Elena S.F., Pallas V., Sanchez-Navarro J.;
RT   "Genetic diversity of the movement and coat protein genes of South American
RT   isolates of Prunus necrotic ringspot virus";
RL   Arch. Virol. 153(5):909-919(2008).
XX
RN   [2]
RP   1-675
RA   Nicola F., Fajardo T., Prodan S., Herranz M.C., Aparicio F.,
RA   Montealegre J., Pallas V., Sanchez-Navarro J.A.;
RT   ;
RL   Submitted (19-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Biologia del Estres, IBMCP (UPV-CSIC), Av. de los Naranjos s/n, Valencia
RL   46022, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .675
FT                   /organism="Prunus necrotic ringspot virus"
FT                   /segment="RNA3"
FT                   /specific_host="Nectarine cv. Early John"
FT                   /isolate="NctCl.ear1"
FT                   /mol_type="genomic RNA"
FT                   /country="Chile"
FT                   /db_xref="taxon:37733"
FT   gene            1. .675
FT                   /gene="CP"
FT   CDS             1. .675
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ABU49893.1"
FT                   /translation="MVCRICNHTHAGGCRSCKKCHPNGALVPLRAQQRAANNPNRNPNR
FT                   ASSGTGPVVRPQPVVKTTWTVRGPNVPPRIPKGFVAHNHREVTTTEAVKYLSIDFTTTL
FT                   PQLMGQNLTLLTVIVRMNSMSSNGWIGMVEDYKVEQPDGPNALSRKGFLKDQPRGWQFE
FT                   PPSDLDFDTFARTHRVVIEFKTEVPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDEDLL
FT                   EI"
XX
SQ   Sequence 675 BP; 165 A; 156 C; 191 G; 163 T; 0 other;

ef565252 Length: 675  27-APR-2008  Type: N  Check: 6766  ..

       1  atggtttgcc gaatttgcaa tcatacccac gctggtggat gccgttcttg
      51  caagaagtgc catccgaatg gagctctggt cccactcagg gctcaacaga
     101  gggctgcgaa taacccgaat agaaacccga atagggcttc gagtggtacc
     151  ggaccagtgg tccgaccaca accggtcgtg aagaccacct ggaccgtgag
     201  aggtccgaat gtgcctcccc gaattcctaa ggggtttgta gcacacaatc
     251  accgagaggt gacgacgaca gaggcagtga agtacttgag catagacttc
     301  acgaccactc tccctcagtt gatgggtcag aatttgaccc tattgactgt
     351  tatagtccga atgaactcta tgagttcgaa tggttggatt gggatggtgg
     401  aggactataa ggtggaacaa cctgatggtc cgaatgccct gtctaggaag
     451  gggttcttga aggaccaacc gagaggttgg cagttcgaac ctccttccga
     501  tttagatttc gacacttttg cgcgtacgca tcgtgtcgtt atcgaattca
     551  agaccgaagt gcccgctggg gccaaggtct tggttaggga tttgtacgta
     601  gtggtaagtg atttaccacg agtgcaaatt ccgactgatg tcttgctggt
     651  cgatgaagac ctgcttgaga tctag