Sequence of DPV Sugarcane bacilliform virus
Sugarcane bacilliform virus isolate CB91 clone 1 polyprotein gene, partial cds; and unknown genes.
ACC No: EF635928
Dated: 2011-01-26 | Length: 1902 | CRC: -1439950124
ID EF635928; SV 1; linear; genomic DNA; STD; VRL; 1902 BP.
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AC EF635928;
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DT 01-JAN-2010 (Rel. 103, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Sugarcane bacilliform virus isolate CB91 clone 1 polyprotein gene, partial
DE cds; and unknown genes.
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KW .
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OS Sugarcane bacilliform virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
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RN [1]
RP 1-1902
RA Balamuralikrishnan M., Viswanathan R., Karuppaiah R.;
RT "Assessing the variability of sugarcane bacilliform virus causing leaf
RT freckle disease of sugarcane in India";
RL Unpublished.
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RN [2]
RP 1-1902
RA Balamuralikrishnan M., Viswanathan R., Karuppaiah R.;
RT ;
RL Submitted (29-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Sugarcane Breeding Institute, Sugarcane (Post),
RL Coimbatore, Tamil Nadu 641 007, India
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FH Key Location/Qualifiers
FH
FT source 1. .1902
FT /organism="Sugarcane bacilliform virus"
FT /isolate="CB91"
FT /mol_type="genomic DNA"
FT /clone="1"
FT /db_xref="taxon:12435"
FT CDS <1. .192
FT /codon_start=1
FT /product="unknown"
FT /note="ORF1"
FT /protein_id="ABV00879.1"
FT /translation="LRVEYLKRRPLSKEDVAELVLTISEQPKFIEKQTELLLEQVKGLV
FT EAVHQEVETVHHMVKRIS"
FT CDS 193. .564
FT /codon_start=1
FT /product="unknown"
FT /note="ORF2"
FT /protein_id="ABV00880.1"
FT /translation="MSINEPVYAAALTKTKTIFGDQGEGFVTASPGATTAAKQLNTVIE
FT LLLTLHGKVTALEGRLQDLKEDIAKKADKPSTSGLDKQFDDLTKKIEGLRSGSQPKQPV
FT VRGKLKVVKDPFDLLKKIK"
FT CDS 561. .>1902
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF3"
FT /protein_id="ABV00881.1"
FT /translation="MTQRVRGTGSSTQLEDGTLLDDQIRDYRRGQHYKYAAQKKLSKAL
FT SWTKTVDSSPSEQTLEMVMNPEIELEKSLKKRARAFPAEVIYSPRDDDVHHKVFIGQSS
FT QDVMIVDDNQVDMTYIKEETFEKLEQAGLRYIHLGALAIRIQPLHAAWSGKLVFLVLRD
FT CRNNPPTTLGAMEVDLSKGAQLIYVLPNFMLTIKDLYHGIQLSLKTKGYEGWQGEANLH
FT LERLITGRLSNTSNVAFKYKIDGVTAYLKTNGIKAINAQKESTKKIRGGEWNVQPSKVE
FT VVMEPRDMTQNQNFDGTTSFRFSNFQASASRPAPVYNDEDEVDMEAHMALCEDDEEETD
FT QEWIDRYLSEYSTQQKMVGEIDEEEDIISNFLSNISQEEEAYPAEEIEEEYPALKRLEQ
FT IMKTRVIVKELPEEQAQPEEAKMAGSEGSSAIWQPGTMDLDGNIPGYA"
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SQ Sequence 1902 BP; 627 A; 404 C; 476 G; 395 T; 0 other;
ef635928 Length: 1902 26-JAN-2011 Type: N Check: 3469 ..
1 cttcgtgtgg aatacctgaa gcggaggcct ctatccaagg aagacgtcgc
51 ggagctggtg ctcaccatat ctgagcagcc aaagttcatc gagaagcaga
101 cagaattgct tcttgaacaa gtcaagggat tggtggaagc ggtacatcaa
151 gaggttgaga cggttcacca catggtgaaa cgtatcagct aaatgagtat
201 caacgaacct gtatacgcag cagctcttac caagaccaag actatcttcg
251 gcgaccaagg agagggattt gtcactgcaa gtccaggggc gacaactgcg
301 gcaaagcagc tcaacactgt cattgagctt ctgctgacgc tgcacggcaa
351 ggtcactgct cttgaaggaa ggcttcaaga cctcaaggag gacattgcta
401 agaaggcgga caagcccagc acttcagggc ttgataagca gttcgacgat
451 ctcaccaaga agatcgaagg actccgctcc ggcagccagc cgaagcaacc
501 ggtggttcga ggaaagttga aagtggtcaa agaccccttc gacctcctta
551 agaagataaa atgacgcagc gcgtcagagg gacgggatca tctactcagc
601 ttgaagatgg aacacttcta gatgatcaga tccgagatta ccgaagaggg
651 caacactata aatatgcagc ccagaagaaa ttgtccaagg ctctcagttg
701 gacaaagacg gtggacagca gcccaagtga gcaaacactt gagatggtaa
751 tgaacccgga aatagagctg gaaaagtcat tgaagaagag ggcgcgagcc
801 ttcccagcag aagtcatcta ctccccaaga gatgatgatg ttcatcacaa
851 ggtgttcata gggcagtcta gccaagacgt catgatcgtc gacgacaatc
901 aagttgacat gacgtacatc aaggaagaga cctttgagaa gcttgagcaa
951 gccggattaa gatacatcca tctcggagca ctggctatta gaatacagcc
1001 tctacatgca gcatggtctg gaaagttggt atttctagtc ctcagagatt
1051 gcagaaacaa tccaccaaca acattgggag ctatggaagt ggatctgagc
1101 aagggagcac agttgatcta cgtgctacca aattttatgt taactatcaa
1151 agatctctat catggtatcc agctctcact caagaccaaa ggctatgaag
1201 gttggcaagg agaagcaaat ctacatctag agagattgat cactggaaga
1251 ctctctaaca cctcaaatgt tgcctttaag tataagattg atggtgttac
1301 ggcttatctg aaaactaatg gtataaaagc cattaatgca cagaaagagt
1351 ctacaaagaa gataagaggc ggtgaatgga atgtgcaacc ctcaaaagta
1401 gaagttgtca tggagcctag agacatgaca cagaaccaga actttgatgg
1451 aacaacatca ttcaggttct caaactttca agcatcagct agtcgaccag
1501 caccagtata caatgatgaa gatgaagtcg acatggaagc tcacatggct
1551 ctatgtgagg atgatgagga ggaaaccgat caggaatgga tcgatcggta
1601 tctatcagag tactctactc agcaaaagat ggtgggagaa atagatgaag
1651 aagaagatat aatttcaaac tttttgtcaa acatctctca agaagaagaa
1701 gcctacccag ctgaagaaat tgaagaagag tacccggctt tgaaaagact
1751 cgagcaaatc atgaaaactc gagtaattgt caaagagctg ccagaagaac
1801 aagctcagcc ggaagaggca aagatggctg gatctgaagg atcctctgct
1851 atttggcaac caggaacaat ggatttggat ggaaacatcc ctggctatgc
1901 ac