Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate CBB38192 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
ACC No: EF635936
Dated: 2009-01-01 | Length: 613 | CRC: 43739836
ID EF635936; SV 1; linear; mRNA; STD; VRL; 613 BP.
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AC EF635936;
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DT 01-JAN-2009 (Rel. 98, Created)
DT 01-JAN-2009 (Rel. 98, Last updated, Version 1)
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DE Sugarcane yellow leaf virus isolate CBB38192 putative aphid transmission
DE factor mRNA, partial cds; and capsid protein and movement protein mRNAs,
DE complete cds.
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KW .
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OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-613
RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT "Detection and molecular characterization of sugarcane yellow leaf virus,
RT causing yellow leaf of sugarcane in tropical India";
RL Unpublished.
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RN [2]
RP 1-613
RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT ;
RL Submitted (30-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Sugarcane Breeding Institute, Sugarcane (post),
RL Coimbatore, Tamil Nadu 641 007, India
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FH Key Location/Qualifiers
FH
FT source 1. .613
FT /organism="Sugarcane yellow leaf virus"
FT /host="Saccharum sp. hybrid, variety B38192"
FT /isolate="CBB38192"
FT /mol_type="mRNA"
FT /country="India"
FT /clone="2"
FT /db_xref="taxon:94290"
FT CDS 1. .>613
FT /codon_start=1
FT /transl_except=(pos:589. .591,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="ORF5; produced by translational readthrough of TAG
FT stop codon of ORF3"
FT /protein_id="ACB87414.1"
FT /translation="MNTGANRPRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKIASFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPT"
FT CDS 1. .591
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF3"
FT /protein_id="ACB87412.1"
FT /translation="MNTGANRPRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKIASFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT CDS 32. .484
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="ACB87413.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRSTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLQASPSRGTPRKPSRPPSSGGKTS"
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SQ Sequence 613 BP; 175 A; 170 C; 147 G; 121 T; 0 other;
ef635936 Length: 613 01-JAN-2009 Type: N Check: 5227 ..
1 atgaatacgg gcgctaaccg tccacgaagg aatgtcagaa gacgcgctaa
51 ccgtcgtcga cagactcggc cagtggtcgt ggtccggcct gccgcaggac
101 ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga
151 ggaccgggag gaagaagcaa cagggatgtt ctcactttca cgatcgacga
201 tctcaaggcc aactcaaccg ggatcctcaa attcggaccg aacttatctc
251 agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa
301 atcacaagtc tcactattca gtataactca tgctcctccg acgcaactcc
351 aggtgcaatc gcacttgaag tggatacatc ctgctcccaa acaacaacag
401 gctccaagat tgcaagcttc cccgtcaaga ggaacgccaa gaaaaccttc
451 ccggccccct tcatcagggg gaaagacttc atgactacat cagctgatca
501 gttttggctt ttgtacaaag ggaatggaga cggaagccta gcaggacaat
551 tcgtctgccg atttgaatgt ttattccaga atcccaaata ggtaggcgac
601 gctcccccaa cac