Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate CB6304 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
ACC No: EF635942
Dated: 2009-01-01 | Length: 613 | CRC: -1613189319
ID EF635942; SV 1; linear; mRNA; STD; VRL; 613 BP.
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AC EF635942;
XX
DT 01-JAN-2009 (Rel. 98, Created)
DT 01-JAN-2009 (Rel. 98, Last updated, Version 1)
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DE Sugarcane yellow leaf virus isolate CB6304 putative aphid transmission
DE factor mRNA, partial cds; and capsid protein and movement protein mRNA,
DE complete cds.
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KW .
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OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-613
RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT "Detection and molecular characterization of sugarcane yellow leaf virus,
RT causing yellow leaf of sugarcane in tropical India";
RL Unpublished.
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RN [2]
RP 1-613
RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT ;
RL Submitted (30-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Sugarcane Breeding Institute, Sugarcane (post),
RL Coimbatore, Tamil Nadu 641 007, India
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FH Key Location/Qualifiers
FH
FT source 1. .613
FT /organism="Sugarcane yellow leaf virus"
FT /host="Saccharum sp. hybrid, variety Co 6304"
FT /isolate="CB6304"
FT /mol_type="mRNA"
FT /country="India"
FT /db_xref="taxon:94290"
FT CDS 1. .>613
FT /codon_start=1
FT /transl_except=(pos:589. .591,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="ORF5; produced by translational readthrough of TAG
FT stop codon of ORF3"
FT /protein_id="ACB87430.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVSDAPPT"
FT CDS 1. .591
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF3"
FT /protein_id="ACB87428.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT CDS 32. .484
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="ACB87429.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS"
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SQ Sequence 613 BP; 179 A; 168 C; 144 G; 122 T; 0 other;
ef635942 Length: 613 01-JAN-2009 Type: N Check: 5042 ..
1 atgaatacgg gcgctaaccg ttcacgaagg aatgtcagaa gacgcgctaa
51 ccgtcgtcga cagactcggc cagtggtcgt ggtcaggcct gccgcaggac
101 ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga
151 ggaccgggag gaagaagcaa cagggatgtt ctcactttca cgattgacga
201 tctcaaggcc aactcaaccg ggatcctcaa attcggaccg aacctatctc
251 agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa
301 atcacaagtc tcacaattca gtataactca tgctcctccg acgcaactcc
351 aggtgcaatc gcacttgaag tggatacatc ctgctcccaa acaacaacag
401 gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaaaccttc
451 ccggccccct tcatcagggg gaaagacttc atgactacat cagctgatca
501 gttttggctt ttgtacaaag ggaatggaga cggaagccta gcaggacaat
551 tcgtctgccg atttgaatgt ttattccaga atcccaaata agtaagcgac
601 gctcccccaa cac