Sequence of DPV Okra yellow crinkle virus
Okra yellow crinkle virus-[Mali], complete genome.
ACC No: EU024118
Dated: 2007-07-23 | Length: 2791 | CRC: -891824204
ID EU024118; SV 1; circular; genomic DNA; STD; VRL; 2791 BP.
XX
AC EU024118;
XX
DT 23-JUL-2007 (Rel. 92, Created)
DT 23-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE Okra yellow crinkle virus-[Mali], complete genome.
XX
KW .
XX
OS Okra yellow crinkle virus-[Mali]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2791
RA Kon T., Rojas M.R., Gilbertson R.L.;
RT "Molecular characterization of okra-infecting begomoviruses";
RL Unpublished.
XX
RN [2]
RP 1-2791
RA Kon T., Rojas M.R., Gilbertson R.L.;
RT ;
RL Submitted (18-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology, University of California, Davis, One Shields
RL Avenue, Davis, CA 95616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2791
FT /organism="Okra yellow crinkle virus-[Mali]"
FT /specific_host="Abelmoschus esculentus"
FT /mol_type="genomic DNA"
FT /country="Mali:Bamako"
FT /db_xref="taxon:454126"
FT gene 162. .512
FT /gene="V1"
FT CDS 162. .512
FT /codon_start=1
FT /gene="V1"
FT /product="V1"
FT /note="pre-coat protein"
FT /protein_id="ABS29523.1"
FT /translation="MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDL
FT ISVIRAKNYVEATRRYNYFHARLEGSSKAELRQPLHEPCNCPHCPRHKQTSVMDLPANV
FT QKAQNVPDVQKP"
FT gene 322. .1098
FT /gene="V2"
FT CDS 322. .1098
FT /codon_start=1
FT /gene="V2"
FT /product="V2"
FT /note="coat protein"
FT /protein_id="ABS29524.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRATVPTALGTSKRRSW
FT TYRPMYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTH
FT RTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDN
FT EPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN"
FT gene complement(1095. .1499)
FT /gene="C3"
FT CDS complement(1095. .1499)
FT /codon_start=1
FT /gene="C3"
FT /product="C3"
FT /note="replication enhancer protein"
FT /protein_id="ABS29527.1"
FT /translation="MDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHI
FT IDVQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINL
FT VIRAVAHVLYSVLLNTIDVTESHEIKFDIY"
FT gene complement(1240. .1647)
FT /gene="C2"
FT CDS complement(1240. .1647)
FT /codon_start=1
FT /gene="C2"
FT /product="C2"
FT /note="transcriptional activator protein"
FT /protein_id="ABS29526.1"
FT /translation="MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHI
FT NCANHGFSHRGTHHCSSDNEWRFYLGDTKSPIFQDHKTPNTPVQPAVSHNRCPNPVQPQ
FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKGI"
FT gene complement(1556. .2635)
FT /gene="C1"
FT CDS complement(1556. .2635)
FT /codon_start=1
FT /gene="C1"
FT /product="C1"
FT /note="replication associated protein"
FT /protein_id="ABS29525.1"
FT /translation="MPRAGRFSIKAKNYFLTFPKCSLSKEDALGQLKDLQTPTNKKYIK
FT ICRELHENGEPHLHVLIQFEGKYNCTNQRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSADAAMAIIREKLPKDYIFQYH
FT NLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSIVVEGD
FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLSEPL
FT YSTTDQSPAPHSQEEGSEA"
FT gene complement(2221. .2478)
FT /gene="C4"
FT CDS complement(2221. .2478)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="ABS29528.1"
FT /translation="MGNHISMCLSSSRANTTAQIRDSSTWSPQVGQHISIRTFRELSLA
FT RTSSPTSTRTATPWNGESSRSTEEVLGEAARLLTTLQQRH"
XX
SQ Sequence 2791 BP; 754 A; 582 C; 632 G; 823 T; 0 other;
eu024118 Length: 2791 23-JUL-2007 Type: N Check: 7456 ..
1 accggtgggc gcgaaaaaaa aggtggtccc cgccccacgt gaacatgtcg
51 cgcgagtgct gaacatgtcg cgcgatccct tccaatcaga ataaagcctg
101 aaagctatgt taaggacatt ttgtccttaa atacttcggc cccaagtatt
151 agatttacaa catgtgggat ccattagtca acgagttccc cgaatctgtg
201 catgggtttc gttgtatgct tgcaataaaa tatttgcagg ctttagagga
251 tacttacgag cccaacactt tggggtctga tttaattaga gatttaatat
301 ctgtgattag agcgaagaat tatgtcgaag cgaccaggag atataattat
351 ttccacgccc gtctcgaagg ttcgtcgaag gctgaacttc gacagccctt
401 acacgagccg tgcaactgtc cccactgccc taggcacaag caaacgtcgg
451 tcatggactt accggccaat gtacagaaag cccagaatgt accggatgta
501 cagaagccct gatgttcctc gaggatgtga aggtccatgt aagatccaat
551 catttgacca acgtgactct gtaacccata caggtaattc gagatgtcta
601 agtgatgtca caagaggtaa tgggcttact catcgtacag gtaaacgttt
651 tgttatcaag tctgtttaca tattaggtaa ggtttggatg gacgagaatg
701 ttaagaagtc caatcacaca aacacgtgta tgttctggtt agttagagat
751 agacgtccat atggtaatag cccacaagat tttggacagg tatttaatat
801 gtttgataat gagcccagca ctgcaacggt tatgaacgac aagcgtgacc
851 gttatcaggt tttaaagagg tttcaagcaa ctgttactgg aggaccgtct
901 ggttgcaaag aggctgctat tgttaggcgt tttttcaaga taaaccatca
951 tgtcacttac aatcatcagg aagcagccaa atatgagaat catacggaga
1001 atgctttact actgtatatg gcatgtaccc atgcgtcaaa tccagtatat
1051 gcgagtctta aaatacgaat gtatttctat gattcagtca gcaattaata
1101 aatatcgaat tttatttcat gactttctgt tacatctatt gtatttagta
1151 gtactgaata cagaacatgg gcaactgctc taatcactaa attaattgaa
1201 attacaccca aattatttaa gtattttaga acctgtgttc taaataccct
1251 taagaaacga ccagtctgag gccgtaaggt cgtccagacc ctgaagttga
1301 gaaaacactt gtgaatcccc aatgccttcc gaaggttgtg gttgaaccgg
1351 atttggacat ctattatgtg aaacggccgg ttgaacgggt gtattaggtg
1401 tcttgtgatc ttgaaatata ggggatttgg tgtctcccag ataaaaacgc
1451 cattcgttgt ctgacgagca gtgatgagtt cccctgtgcg agaatccatg
1501 gttggcgcag tttatgtgta ggtagtatga gcatccacac ttgaggtcga
1551 ttcgtctacg cctcactacc ttcttcttgg ctatgcggtg ctggactttg
1601 atcggtagtt gagtagagtg gctcgctgag ggtgatgaat gttgcatttt
1651 taattgccca ggctttcaat gcagcatttt tatcttcttc gagatattct
1701 ttataggaag ccgttggccc aggattgcag aggaagattg ttgggatacc
1751 tcctttaatt tgaattggtt tcccgtactt cgtgttgctc tgccagtccc
1801 tttgggcccc catgaattct ttaaagtgtt tgagataatg cgggtcaaca
1851 tcatctatga cgttatacca tgcttcattt gaatagaccc ttgggctaag
1901 atctatatga ccacatagat aattatgtgg gcctaaggac ctagcccaca
1951 ttgtcttccc tgttctacta tcaccctcaa caactatact ttgaggtctc
2001 cagggccgcg cagcggcacc aacgacgttc tcagctgccc attcttctag
2051 ttcttcggga acattattaa aagaagaaga cgaaaaagga gaaacataaa
2101 cttcgggcgg agcctgaaag attctatcta agtttgactt taaattatga
2151 tattggaaaa tataatcttt agggagtttt tccctaataa ttgccatagc
2201 agcatcagcg gaacctgcat tcaatgcctc tgctgcagcg tcgttagcag
2251 tctggcagcc tcccctagca cttcttccgt cgacctggaa ctctccccat
2301 tccagggtgt cgccgtcctt gtcgatgtag gacttgacgt ccgagctaga
2351 cttagctccc tgaatgttcg gatggaaatg tgttgaccta cttggggaga
2401 ccaggtcgaa gaatctctga tttgtgcagt tgtatttgcc ctcgaactgg
2451 ataagcacat ggagatgtgg ttccccattc tcatgtaact cacggcagat
2501 tttaatatat tttttatttg taggggtttg taaatctttg agttgcccta
2551 atgcgtcttc tttagacaga gagcattttg ggaaagtgag aaaataattt
2601 ttggccttaa tgctaaaacg accagctctg ggcatcttga atgtcgttta
2651 gcaatcgggg ggcactcaaa gtctggtgaa tcgggggaac tggggggcaa
2701 tttatatgtg ccccccaaat ggcattctcg taattttaga aagatactta
2751 ctttaattca aattccccat agcgcccacc gttataatat t