Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Malaysia-JB polyprotein gene, partial cds.

ACC No: EU082207

Dated: 2007-08-28 | Length: 924 | CRC: -1762704614

                
ID   EU082207; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   EU082207;
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DT   28-AUG-2007 (Rel. 93, Created)
DT   28-AUG-2007 (Rel. 93, Last updated, Version 1)
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DE   Papaya ringspot virus isolate Malaysia-JB polyprotein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Noor Suhana A., Habibuddin H., Tan C.S.;
RT   "Analysis of coat protein genes of Papaya ringspot virus isolates from
RT   different areas of Malaysia";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Noor Suhana A., Habibuddin H., Tan C.S.;
RT   ;
RL   Submitted (06-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL   Biotechnology Research Centre, Malaysian Agricultural Research and
RL   Development Institute, MARDI Headquarter, Serdang, Selangor 43400, Malaysia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Malaysia-JB"
FT                   /mol_type="genomic RNA"
FT                   /country="Malaysia"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /protein_id="ABU53683.1"
FT                   /translation="SRSADDHQLTCGSNTHVFHQSKNEAVDAGLNEKLKEKEKQKEKEK
FT                   DKQKDKDNDGASDGNDVSTSTKTGERDRDVNVGTSGTFTVPRMKSFTDKVILPRIKGKT
FT                   VLNLNHLLQYNPQQIDILNTRATHSPFEKWYEEVRNDYGLNDNEMQVMLNGLMVWCIEN
FT                   GTSPDLSGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYM
FT                   PRYGIKRNLADISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVEDVNKDMHSLLGMRY"
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SQ   Sequence 924 BP; 318 A; 161 C; 221 G; 224 T; 0 other;

eu082207 Length: 924  28-AUG-2007  Type: N  Check: 513  ..

       1  tcgagaagcg ctgatgatca tcagttaacc tgcggcagta acacacatgt
      51  gtttcaccag tccaagaatg aagctgtgga tgctggtctg aacgagaagc
     101  tcaaagaaaa agaaaaacag aaagaaaaag aaaaagacaa acaaaaagat
     151  aaagacaatg atggagctag tgacggaaac gatgtgtcga ctagcacaaa
     201  aactggagag agggatagag acgtcaatgt cgggactagt ggaactttca
     251  ctgttccgag gatgaagtca tttactgata aggtgatttt accaagaatt
     301  aaaggaaaaa ctgtccttaa tttaaatcat cttcttcagt ataatccgca
     351  acaaattgac atcttaaaca ctcgtgctac tcattctcca tttgagaagt
     401  ggtacgagga agtgagaaat gattatggcc ttaatgataa tgaaatgcaa
     451  gtaatgttaa atggtttgat ggtttggtgt atcgaaaatg gtacatctcc
     501  agacttatct ggtgtctggg tgatgatgga tggagaaacc caagttgatt
     551  accctattaa acctttgatt gaacacgcaa ctccttcatt taggcaaatc
     601  atggctcact tcagtaacgc ggcagaggca tacatcgcaa aaaggaatgc
     651  aactgagagg tatatgccgc ggtatggaat taagagaaat ttggctgaca
     701  ttagtctcgc tagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgtgaagc tcatatgcag atgaaggctg cagcgctacg
     801  caatactaat cgcagaatgt ttggaatgga cggcagtgtc agtaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaacaa agacatgcac
     901  tctctcctgg gtatgcgcta ttga