Sequence of DPV Sugarcane yellow leaf virus

Sugarcane yellow leaf virus isolate CB99016 read-through protein mRNA, partial cds; and coat protein and movement protein mRNAs, complete cds.

ACC No: EU089687

Dated: 2009-02-02 | Length: 613 | CRC: 875270962

                
ID   EU089687; SV 1; linear; mRNA; STD; VRL; 613 BP.
XX
AC   EU089687;
XX
DT   02-FEB-2009 (Rel. 99, Created)
DT   02-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus isolate CB99016 read-through protein mRNA,
DE   partial cds; and coat protein and movement protein mRNAs, complete cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-613
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   "Coat protein variability of RNA viruses infecting sugarcane in India";
RL   Unpublished.
XX
RN   [2]
RP   1-613
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   ;
RL   Submitted (08-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Sugarcane Breeding Institute (Indian Council of
RL   Agricultural Research), Sugarcane Post, Coimbatore, Tamil Nadu 641 007,
RL   India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .613
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid Co 99016"
FT                   /isolate="CB99016"
FT                   /mol_type="mRNA"
FT                   /country="India:Tamil Nadu"
FT                   /db_xref="taxon:94290"
FT   CDS             1. .>613
FT                   /codon_start=1
FT                   /transl_except=(pos:589. .591,aa:OTHER)
FT                   /product="read-through protein"
FT                   /note="ORF5"
FT                   /protein_id="ABY40751.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVSDAPPT"
FT   CDS             1. .591
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /protein_id="ABY40749.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT   CDS             32. .484
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /protein_id="ABY40750.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS"
XX
SQ   Sequence 613 BP; 177 A; 169 C; 145 G; 122 T; 0 other;

eu089687 Length: 613  02-FEB-2009  Type: N  Check: 5224  ..

       1  atgaatacgg gcgctaaccg ttcacgaagg aatgtcagaa gacgcgctaa
      51  ccgtcgtcga cagactcggc cagtggtcgt ggtccggcct gccgcaggac
     101  ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga
     151  ggaccgggag gaagaagcaa cagggatgtt ctcactttca cgattgacga
     201  tctcaaggcc aactcaaccg ggatcctcaa attcggaccg aacctatctc
     251  agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa
     301  atcacaagtc tcacaattca gtataactca tgctcctccg acgcaactcc
     351  aggtgcaatc gcacttgaag tggatacatc ctgctcccaa acaacaacag
     401  gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaaaccttc
     451  ccggccccct tcatcagggg gaaagacttc atgactacat cagctgatca
     501  gttttggctt ttgtacaaag ggaatggaga cggaagccta gcaggacaat
     551  tcgtctgccg atttgaatgt ttattccaga atcccaaata ggtaagcgac
     601  gctcccccaa cac