Sequence of DPV Cucurbit aphid-borne yellows virus

Cucurbit aphid-borne yellows virus clone pXHY0207-1 polymerase (RdRp) and coat protein (CP) genes, partial cds.

ACC No: EU091149

Dated: 2008-06-01 | Length: 1356 | CRC: 1980078362

                
ID   EU091149; SV 1; linear; genomic RNA; STD; VRL; 1356 BP.
XX
AC   EU091149;
XX
DT   01-JUN-2008 (Rel. 96, Created)
DT   01-JUN-2008 (Rel. 96, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus clone pXHY0207-1 polymerase (RdRp) and
DE   coat protein (CP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1356
RX   PUBMED; 18414972.
RA   Xiang H.Y., Shang Q.X., Han C.G., Li D.W., Yu J.L.;
RT   "Complete sequence analysis reveals two distinct poleroviruses infecting
RT   cucurbits in China";
RL   Arch. Virol. 153(6):1155-1160(2008).
XX
RN   [2]
RP   1-1356
RA   Han C.;
RT   ;
RL   Submitted (09-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL   Road, Haidian District, Beijing 100094, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1356
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /specific_host="melon"
FT                   /isolate="Beijing"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /clone="pXHY0207-1"
FT                   /note="acronym: CABYV"
FT                   /db_xref="taxon:91753"
FT   gene            <1. .576
FT                   /gene="RdRp"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="polymerase"
FT                   /protein_id="ABW77574.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSD
FT                   GTLLSQQVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESVGSNLAKYAE
FT                   LGFKVEVSSKLEFCSHIFEREDLAIPVNKAKMIYKLIHGYEPECGNAEVLINYLTACFA
FT                   VLNELRSDPQLVSTLHQWLVLPVQPQKI"
FT   misc_feature    577. .771
FT                   /note="intergenic NCR"
FT   gene            772. .>1356
FT                   /gene="CP"
FT   CDS             772. .>1356
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ABW77575.1"
FT                   /translation="MNTVAARNQNGMGRRRRNRRRTSKSNRVVVVQTTGQPQRGRRRRR
FT                   NPRRSPRGGRAGGRPGETFVFSKDNLTGSSSGAITFGPSLSESPAFSSGILKAYHEYKI
FT                   SMVKLEFISEASSTSSGSISYELDPHCKLNALQSTVNKFGITKSGSRTWSAKLINGLEW
FT                   HDATEDQFRILYKGNGSSSTAGSFRITIKCQV"
XX
SQ   Sequence 1356 BP; 373 A; 345 C; 332 G; 306 T; 0 other;

eu091149 Length: 1356  01-JUN-2008  Type: N  Check: 8255  ..

       1  agcgtttcgg actggctact tgaagatgat atggaagtcc gaaaccgcct
      51  gacgctggac attaatgaga ccaccaagcg cttaagatca gcttggttga
     101  agtgcatctc gaatagcgtc ctcagcctct ccgatgggac cctcctgtca
     151  caacaggtcc ccggagtaca gaaatctggc agctacaata cctcatcctc
     201  caattctagg attcgagtga tggctgcata tcattgcggg gctgagtggg
     251  caatggcgat gggcgatgac gccctcgagt cagtcggatc aaacctagcg
     301  aaatacgctg agctgggttt taaagtcgag gtttcctcaa aactggaatt
     351  ttgctcacat atttttgaac gtgaggacct cgccattccg gtcaacaaag
     401  ccaaaatgat atacaagttg atacatggct atgaaccgga atgtggcaat
     451  gctgaggtct tgattaacta tctgaccgcc tgtttcgcag ttctcaacga
     501  attgcggtca gatcctcagc ttgtctcgac tctccatcag tggctggttc
     551  ttccagtgca gccacaaaag atataagggg agtataaaga acactagccg
     601  gaaatacgtt gttgcaattg ccggaagttt aagccaacta caaaataggc
     651  caagcggatt ttagattcgt agcaggattc acatcgggct tcctggcagc
     701  tataccactt tgcgcactag gcctatacct aatctaccta aagatttcag
     751  cccacgttcg atcaattgtt aatgaatacg gtcgcggcta ggaatcaaaa
     801  tggcatggga aggaggagac ggaaccgtcg acgcacttca aagagtaacc
     851  gcgtggttgt ggtccaaacc actggccaac cacaacgcgg aagacgacga
     901  cgacgaaatc caagacgttc tcctcgagga ggcagagctg gaggacgccc
     951  aggtgaaaca tttgtattca gcaaagacaa tctcacgggc agttcctccg
    1001  gagcaatcac tttcgggccg tctctatcag agagcccagc attcagctct
    1051  ggaatactca aggcctacca tgagtataaa atctcaatgg tcaagttgga
    1101  gttcatctcc gaggcctctt ccacctcctc aggttccatc tcttatgagt
    1151  tggaccccca ctgcaagctt aacgccctcc aatccacggt taataaattc
    1201  ggaatcacga agagtggatc tagaacatgg agcgcgaagc tcatcaacgg
    1251  gctggaatgg cacgacgcca cggaagatca attccgcatc ctatacaaag
    1301  gaaacgggag ctcttcaacg gcgggatcgt tcaggatcac catcaagtgc
    1351  caggtc