Sequence of DPV Dandenong virus
Dandenong virus isolate 0710-2678 segment S glycoprotein (GPC) and nucleoprotein (NP) genes, complete cds.
ACC No: EU136038
Dated: 2008-03-05 | Length: 3301 | CRC: 598480585
ID EU136038; SV 1; linear; genomic RNA; STD; VRL; 3301 BP.
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AC EU136038;
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DT 05-MAR-2008 (Rel. 95, Created)
DT 05-MAR-2008 (Rel. 95, Last updated, Version 1)
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DE Dandenong virus isolate 0710-2678 segment S glycoprotein (GPC) and
DE nucleoprotein (NP) genes, complete cds.
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KW .
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OS Dandenong virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC Old world arenaviruses; unclassified Old world arenaviruses.
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RN [1]
RP 1-3301
RA Palacios G., Druce J., Du L., Tran T., Birch C., Briese T., Conlan S.,
RA Quan P.-L., Hui J., Marshall J., Fredrik Simons J., Egholm M.,
RA Paddock C.D., Shieh W.-J., Goldsmith C.S., Zaki S.R., Catton M.,
RA Lipkin W.I.;
RT "A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases";
RL N. Engl. J. Med. 358(10):991-998(2008).
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RN [2]
RP 1-3301
RA Palacios G.F., Druce J., Lei D., Tran T., Birch C., Briese T., Conlan S.,
RA Quan P.-L., Hui J., Marshall J., Fredrik Simons J., Egholm M., Ierino F.,
RA Shieh W.-J., Goldsmith C., Zaki S., Catton M., Lipkin W.I.;
RT ;
RL Submitted (04-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL Center for Infection and Immunity, Department of Epidemiology, Mailman
RL School of Public Health, Columbia University, 722 W 168th Street, Floor 18,
RL New York, NY 10032, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3301
FT /organism="Dandenong virus"
FT /segment="S"
FT /isolate="0710-2678"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:483046"
FT gene 1. .1497
FT /gene="GPC"
FT CDS 1. .1497
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein"
FT /protein_id="ABY20729.1"
FT /translation="MGQLITMFEALPHIIDEVINIVIIVLVIITSIKAVYNFATCGIIA
FT LISFCLLAGRSCGLYGVTGPDIYKGLYQFKSVEFNMSQLNLTMPNACSANNSHHYISMG
FT KSGLELTFTNDSIISHNFCNLTDGFKKKTFDHTLMSIVASLHLSIRGNTNYKAVSCDFN
FT NGITIQYNLSFSDAQSAINQCRTFRGRVLDMFRTAFGGKYMRSGYGWKGSDGKTTWCSQ
FT TSYQYLIIQNRTWENHCEYAGPFGLSRVLFAQEKTKFLTRRLAGTFTWTLSDSSGTENP
FT GGYCLTKWMLIAAELKCFGNTAVAKCNINHDEEFCDMLRLIDYNKAALKKFKEDVESAL
FT HLFKTTVNSLISDQLLMRNHLRDLMGVPYCNYSKFWYLEHVKTGDTSVPKCWLVSNGSY
FT LNETHFSDQIEQEADNMITEMLRKDYIKRQGSTPLALMDLLMFSTSAYLISVFLHLMKI
FT PTHRHIKGGTCPKPHRLTSKGICSCGAFKVPGVKTVWKRR"
FT gene complement(1563. .3239)
FT /gene="NP"
FT CDS complement(1563. .3239)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleoprotein"
FT /protein_id="ABY20730.1"
FT /translation="MSLSKEVKSFQWTQALRRELQGFTSNVKAAVIKDATSLLNGLDFS
FT EVSNVQRIMRKDRRDDKDLQRLRSLNQTVHSLVELKSTSKKNILKVGRLSAEELMSLAA
FT DLEKLKAKIMRSERPQASGVYMGNLTTQQLDQRSQILEMVGMRRPQQGNNGIVRVWDVK
FT DSSLLNNQFGTMPSLTMACMAKQAQTPLNDVVQALTDLGLLYTVKYPNLSDLDRLKDKH
FT PVLGVITEQQSSINISGYNFSLGAAVKAGAALLDGGNMLESILIKPSNSEELLKAVLGA
FT KRKLNMFVSDQVGDRNPYENILYKVCLSGEGWPYIACRTSVVGRAWENTTIDLSGDKPV
FT SSSPRPSPGSAGPPQVGLSYSQTMLLKDLMSGIDPNAPTWIDIEGRFNDPVEIAIFQPQ
FT NGQFIHFYREPTDQKQFKQDSKYSHGMDLADLFNAQPGLTSSVIGALPQGMVLSCQGSD
FT DIRKLLDSQNRRDIKLIDVEMSKEASREYEDKVWDKYGWLCKMHTGIVKDKKKKEITPH
FT CALMDCIIFESASKARLPDLKTVHNILPHDLVFRGPNVVTL"
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SQ Sequence 3301 BP; 852 A; 751 C; 732 G; 966 T; 0 other;
eu136038 Length: 3301 05-MAR-2008 Type: N Check: 8042 ..
1 atggggcagc tcataacaat gtttgaggct ttgccccaca tcatcgatga
51 ggttatcaac atagttataa ttgtgcttgt gataataaca agcataaagg
101 ctgtgtacaa ctttgctacc tgtggcatta ttgcactgat cagcttttgc
151 ctcctagctg gcagatcttg tggtttatat ggtgtcaccg gtcctgacat
201 ttacaaagga ctctaccaat tcaagtccgt ggagttcaac atgtcacagc
251 tgaatttgac gatgcccaat gcatgttcag ccaacaactc ccaccattac
301 atcagtatgg ggaagtctgg cttggagctg acttttacaa atgactccat
351 catcagtcac aacttttgca acctgactga tgggttcaag aaaaaaacct
401 ttgaccacac gctcatgagt atagtggcaa gcctacacct tagcatcaga
451 ggaaacacca actataaggc tgtttcctgt gattttaaca atggaatcac
501 catccaatac aacttgtctt tctctgatgc acaaagtgcc atcaatcaat
551 gcagaacttt tagaggtaga gttctagaca tgttcaggac agctttcgga
601 gggaagtaca tgaggtccgg ctatggttgg aagggctctg atgggaaaac
651 tacttggtgc agtcagacca gttatcaata cctaatcata cagaacagaa
701 catgggagaa tcactgtgag tacgccggtc cttttggcct ctcaagggtt
751 ctctttgctc aggaaaaaac aaaatttctc actaggagat tggcagggac
801 ttttacttgg acactgtcgg attcctcagg aactgagaac ccaggtgggt
851 actgtctgac aaagtggatg cttatagctg ctgaactcaa gtgttttgga
901 aacactgctg ttgctaaatg caatatcaat catgatgagg aattctgtga
951 catgttgagg ctaattgatt acaacaaggc tgctctgaag aaattcaaag
1001 aagacgtaga gtctgccctt catctgttca agacaactgt gaattctcta
1051 atatctgacc agctgttaat gagaaatcat ttgagggact taatgggtgt
1101 gccctattgc aactactcga aattctggta cttggagcat gtgaaaacag
1151 gtgatacaag tgttccaaaa tgctggttgg tttctaacgg ctcatactta
1201 aatgaaacac atttcagtga ccagatagag caggaagcag acaacatgat
1251 cactgagatg ctcaggaaag attacatcaa gaggcaggga agcactcctt
1301 tggcactgat ggacctatta atgttctcta catcggcata tttaatcagt
1351 gttttccttc atctgatgaa aatcccaact catagacaca ttaaaggtgg
1401 cacatgccct aagccacaca ggttaactag taaaggcatc tgtagctgtg
1451 gtgcgttcaa agtgccagga gtgaaaacag tctggaagag acgctgaatg
1501 gcagcgcctc cctgactctc cacctctaag aggtggagag tcagggaggc
1551 ccccttggag gtctagaggg tcactacatt tgggcctctg aagaccaaat
1601 catggggcag tatgttgtgg acagtcttca gatctggcag cctggccttt
1651 gaggcgcttt caaaaatgat gcagtccata agagcacagt gtggagtgat
1701 ttccttcttc tttttgtcct taacaatccc agtgtgcatc ttgcataacc
1751 agccatactt gtcccaaact ttgtcttcat actctcgtga agcttccttg
1801 ctcatttcaa catctataag tttgatgtcc cttctattct gtgagtccaa
1851 aagcttcctg atgtcgtctg atccttgaca gcttagcacc attccttgtg
1901 ggagagcgcc gatcactgag gaagttagtc ctggttgtgc attaaaaagg
1951 tcggctagat ccatcccatg tgagtatttt gagtcctgtt taaattgttt
2001 ttgatctgtt ggttccctgt aaaagtgtat gaattgccca ttctgcggct
2051 ggaatatagc aatctccact ggatcattga atctaccctc aatgtctatc
2101 catgtgggtg catttgggtc gatcccactc atcagatcct ttaatagcat
2151 agtttgacta taactcagtc caacttgggg tggccctgct gatcctggag
2201 aaggtcttgg tgagctagac acaggcttgt ctccagacaa atcaattgtt
2251 gtattttccc acgcccttcc cacaacagat gttctacaag cgatgtaggg
2301 ccaaccttcc cctgacagac agactttgta caagatgttc tcatatgggt
2351 ttctgtcccc tacttggtca gatacaaaca tattcagttt gcgtttagct
2401 ccaagaactg ccttcaggag ttcttcagag ttactgggct taatcaagat
2451 tgactccaac atattgcctc catccaacaa tgcagctcct gccttgacag
2501 ccgcacccaa actgaagttg tatccagata tattgatgct agactgctgt
2551 tcggttatca cgcccaggac tgggtgtttg tcctttagtc tgtcaagatc
2601 agacagattg ggatatttga cagtgtagag taagcccaag tctgtgagtg
2651 cctgcacaac atcgtttagt ggagtctgtg cttgtttagc catgcaggcc
2701 attgtcaggc tgggcattgt accaaactgg ttgttcagga gagatgaatc
2751 tttaacatcc caaactctga caatcccatt gtttccctgc tgaggtctcc
2801 tcatcccaac catctctagg atttgggatc tttggtcaag ttgctgtgtt
2851 gtcagattac ccatgtagac tcctgatgcc tgtggtcttt ctgatctcat
2901 tattttagct ttcagcttct ctaggtcagc tgctaaagac atcaattcct
2951 cggcactgag tctccccacc tttagaatgt ttttcttgga cgtggatttc
3001 aattccacaa gggagtggac tgtttgattc aggctcctca gtctctgtag
3051 gtccttgtca tctctcctgt ctttcctcat gattctttgg acattactga
3101 cttcagaaaa gtcaagtcca ttgaggaggc tggtggcatc cttgatgaca
3151 gcagccttga catttgaggt gaagccctgc agttctctcc tcaatgcctg
3201 agtccattgg aaacttttga cttccttgga caaggacatt gtggtgatct
3251 tcactgtgtc ttccaaaatg cgcaatcaaa ttgcctagga cccacggtgc
3301 g