Sequence of DPV Papaya leaf curl virus
Radish leaf curl virus isolate Pusa Bihar, complete genome.
ACC No: EU194914
Dated: 2011-07-20 | Length: 2761 | CRC: -13914059
ID EU194914; SV 2; circular; genomic DNA; STD; VRL; 2761 BP.
XX
AC EU194914;
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DT 19-NOV-2007 (Rel. 93, Created)
DT 20-JUL-2011 (Rel. 109, Last updated, Version 3)
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DE Radish leaf curl virus isolate Pusa Bihar, complete genome.
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KW .
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OS Radish leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2761
RA Singh M.K., Mandal B., Varma A.;
RT "Complete nucleotide squence of Radish leaf curl virus isolate from tobacco
RT in India";
RL Unpublished.
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RN [2]
RP 1-2761
RA Singh M.K., Mandal B., Varma A.;
RT ;
RL Submitted (06-OCT-2007) to the INSDC.
RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute,
RL Pusa Road, New Delhi, Delhi 110012, India
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RN [3]
RC Sequence update by submitter
RP 1-2761
RA Singh M.K., Mandal B., Varma A.;
RT ;
RL Submitted (19-JUL-2011) to the INSDC.
RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute,
RL Pusa Road, New Delhi, Delhi 110012, India
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CC On Jul 19, 2011 this sequence version replaced gi:160222034.
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FH Key Location/Qualifiers
FH
FT source 1. .2761
FT /organism="Radish leaf curl virus"
FT /host="tobacco"
FT /isolate="Pusa Bihar"
FT /mol_type="genomic DNA"
FT /country="India"
FT /note="transmitted by whitefly"
FT /db_xref="taxon:435646"
FT gene 147. .458
FT /gene="AV2"
FT CDS 147. .458
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /protein_id="AEK48287.1"
FT /translation="MWDPLVNEFLETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL
FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAYV"
FT gene complement(298. .615)
FT /gene="AC5"
FT CDS complement(298. .615)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="AEK48289.1"
FT /translation="MGQPSSTSNITNTHNFTYMLNVMSRLKRLDLTWAFTSSRDIRTSV
FT HPVHPGLSIHRPVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSGRGNDYICWSLRHN
FT F"
FT gene 307. .1077
FT /gene="AV1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEK48288.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLDKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1074. .1478)
FT /gene="AC3"
FT CDS complement(1074. .1478)
FT /codon_start=1
FT /gene="AC3"
FT /product="transcription enhancer protein"
FT /db_xref="GOA:A9LJZ2"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A9LJZ2"
FT /protein_id="ABX11570.1"
FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDI
FT IKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN
FT VIRSVDHVLWNVLQHIVYVEQSYSIKFNIY"
FT gene complement(1219. .1623)
FT /gene="AC2"
FT CDS complement(1219. .1623)
FT /codon_start=1
FT /gene="AC2"
FT /product="replication enhancer protein"
FT /db_xref="GOA:A9LJZ3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A9LJZ3"
FT /protein_id="ABX11569.1"
FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGNRRRRVDLPCGCSYFISLA
FT CHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQLQP
FT EESVGDAQMFSSLPNLDDFTASDWSFLKGL"
FT gene complement(1526. .2611)
FT /gene="AC1"
FT CDS complement(1526. .2611)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiator protein"
FT /db_xref="GOA:A9LJZ4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:A9LJZ4"
FT /protein_id="ABX11568.1"
FT /translation="MPQPKRFLINAKNFFLTYPHCSLSKEETLSQIQNLKTPVNKKYIK
FT ICRELHEDGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSCL
FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT NLNSNLDRIFTPPIEEYISPFSSSSFDQVPDELEEWAAENVVGAAARTLRPMGIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPL
FT YSGSNQSAAQASQEGEQTSSC"
FT gene complement(2152. .2454)
FT /gene="AC4"
FT CDS complement(2152. .2454)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A9LJZ5"
FT /protein_id="ABX11571.1"
FT /translation="MGNLIFTCSSSSKANTNAKITDSSIWYPQPGQHISIRTFRELNQV
FT RTSSPVWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQRLTQAVSQRLLESLRS"
XX
SQ Sequence 2761 BP; 760 A; 541 C; 612 G; 848 T; 0 other;
eu194914 Length: 2761 20-JUL-2011 Type: N Check: 9474 ..
1 accggatggc cgcgcaaatt tttaaagtgg tcccccccac taacttatgt
51 cgcgtaacac gtgggcgaat gaaatgagcc cctcatagct taattgtttt
101 gtggtcccct atttaaactt ccgcagcaag tagtgcattc cgcactatgt
151 gggatccatt agtaaacgag tttcttgaaa ccgttcacgg ttttagatgt
201 atgttagcgg ttaaatatct gcagttagta gaaaagactt attctcctga
251 cacattaggg cacgatttaa ttagggattt aatttcagtt attagggcta
301 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcttc
351 gaaggtacgc cgccgtctca acttcgacag cccatatgtg agccgtgctg
401 ctgcccccat tgtccgcgtc accaaagcaa aagcatgggc gaacaggcct
451 atgtatagaa agcccaggat gtacaggatg tacagaagtc ctgatgtccc
501 tagaggatgt gaaggcccat gtaaggtcca gtcttttgag tctagacatg
551 acattcagca tataggtaaa gttatgtgta ttagtgatgt tactcgtgga
601 actgggctga cccatcgagt gggtaaaagg ttttgtgtta agtctgttta
651 tgttttggac aagatctgga tggatgaaaa tattaagact aagaatcaca
701 cgaatagtgt gatgttcttc ctagttaggg atcgtagacc tgttgataaa
751 ccacaagatt ttggagaggt atttaatatg tttgataatg agcccagtac
801 ggctactgtg aagaatgttc atcgtgatag gtatcaagtt cttcggaaat
851 ggcatgcaac tgttacgggt ggacaatatg cgtcaaagga acaagccctt
901 gtgaagaagt ttgttagggt taacaattat gttgtatata accagcaaga
951 agctggcaag tatgagaatc attctgagaa tgcgttaatg ttgtatatgg
1001 catgtactca tgcctctaac ccagtgtatg ctactttgaa gatacggatc
1051 tatttctatg attccgtaac aaattaataa atattaaatt ttattgaata
1101 tgattgttct acatatacaa tgtgttgtaa tacattccat aaaacatgat
1151 caactgatct gattacatta ttaatactga taactcctaa attatctaaa
1201 tattttaaaa cttgagtctt aaagaccctt aagaaacgac cagtctgagg
1251 ctgtgaagtc atccagattc ggtagactag aaaacatttg tgcatcccca
1301 acgctttcct caggttgtag ttgaactgta tttggacttt gattatgtct
1351 tctttcattg tgaatggacg gttgtggtgt tctgttatct tgaaatacag
1401 gggattttga atctcccaga taaacacgcc attctctgct tgagctgcag
1451 tgatgagttc cccggtgcgt gaatccataa ttgtgacagg ctagtgatat
1501 gaaatatgaa catccacaag ggagatcaac acgacgacgt ctgttcccct
1551 tcttggctag cctgtgctgc actttgattg gaacctgagt agagtgggcc
1601 ttcgagggtg acgaagatcg cattctttaa agcccaattt ttcaatgcgc
1651 tgtttttctc ttcgtccaag aactctttat agcttgagtt gggtcctgga
1701 ttgcagagga agatagtggg aattcctcct ttaatttgaa ctggctttcc
1751 gtacttggta tttgattgcc agtccctttg ggcccccatg aattccttaa
1801 agtgctttag gtagtgggga tctacgtcat caatgacgtt gtaccaggca
1851 tcattattgt agaccttagg actaaggtct aagtgaccac acaggtaatt
1901 atgtggaccc aaagacctgg cccacatcgt cttccccgtt ctactatcac
1951 cctctatcac aatacccatg ggtctcaaag tccgcgcagc ggcaccaaca
2001 acattctcag cagcccattc ttcaagttcg tctggaactt ggtcaaaaga
2051 agaagaagaa aaaggagaaa tatattcctc tataggagga gtaaaaatcc
2101 tatctaaatt agaatttaaa ttatgaaact gtaatacaaa atctttagga
2151 gctaactcct taatgactct aagagcctct gacttactgc ctgcgttaag
2201 cgctgcggcg taagcgtcat tggctgtctg ttgaccccct cttgcagatc
2251 ttccatcgat ctgaaactct ccccagtcga gggtgtctcc gtccttctcc
2301 agacaggact tgacgtccga acttgattta gctccctgaa tgttcggatg
2351 gaaatgtgct gacctggttg gggataccag atcgaagaat ctgttatttt
2401 ggcatttgta tttgccttcg aactggatga gcacgtgaag atgaggttcc
2451 ccatcttcgt gaagttctct gcagatttta atgtattttt tgtttactgg
2501 tgtttttagg ttttgtattt gggaaagtgt ctcttcttta gagagagagc
2551 agtggggata agtgagaaag aaattcttgg catttattaa aaatctcttc
2601 ggttgaggca ttttgaggaa ttctatcggg tcctctcaaa cttgggctat
2651 gtaatcgggg aatgggtcct tatttatagt agaggaccta aatggcatat
2701 ttgtaattag ataaataaat tcaaaatcta tacgctccaa agcggccatc
2751 cgtctaatat t