Sequence of DPV Cucurbit aphid-borne yellows virus

Cucurbit aphid-borne yellows virus pM070823-5 RdRp (RdRp) and coat protein (CP) genes, partial cds.

ACC No: EU244318

Dated: 2009-09-29 | Length: 1360 | CRC: 2113012753

                
ID   EU244318; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
XX
AC   EU244318;
XX
DT   01-JAN-2009 (Rel. 98, Created)
DT   29-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Cucurbit aphid-borne yellows virus pM070823-5 RdRp (RdRp) and coat protein
DE   (CP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1360
RA   Shang Q.X., Xiang H.Y., Han C.G., Li D.W., Yu J.L.;
RT   "Distribution and molecular diversity of three cucurbit-infecting
RT   poleroviruses in China";
RL   Virus Res. 145(2):341-346(2009).
XX
RN   [2]
RP   1-1360
RA   Shang Q., Xiang H., Han C., Li D., Yu J., Yang D., Yang C.;
RT   "Distribution and molecular diversity of two distinct poleroviruses
RT   infecting cucurbits in China";
RL   Unpublished.
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RN   [3]
RP   1-1360
RA   Han C.;
RT   ;
RL   Submitted (24-OCT-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West
RL   Road, Haidian District, Beijing 100094, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1360
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="squash"
FT                   /isolate="Shandong"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /clone="pM070823-5"
FT                   /db_xref="taxon:91753"
FT   gene            <1. .576
FT                   /gene="RdRp"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp"
FT                   /db_xref="GOA:B8PVZ3"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:B8PVZ3"
FT                   /protein_id="ABY75271.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAIAMGDDALESACSNLERYKS
FT                   LGFKVEESSKLEFCSHTFEKEDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFS
FT                   ILNELRSDPSLVETLHQWLVLPVQPQKI"
FT   gene            776. .>1360
FT                   /gene="CP"
FT   CDS             776. .>1360
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B8PVZ4"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:B8PVZ4"
FT                   /protein_id="ABY75272.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPSRGRRQRRN
FT                   RRRSNRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGMRRWAAKQINGLEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
XX
SQ   Sequence 1360 BP; 368 A; 345 C; 341 G; 306 T; 0 other;

eu244318 Length: 1360  29-SEP-2009  Type: N  Check: 6226  ..

       1  agcgtttcgg actggcttct tgaagatgat atggaagtcc gaaaccgcct
      51  gacgctagat ttgaacgaaa ccacgcgccg attacgagca gcatggttac
     101  attgcatatc aaacagcgtc ctctgccttt ctgatggaac attattagcg
     151  cagagagtcc caggcgtgca gaagagtggc agctacaata cgtcgtcgag
     201  caattcccgc atccgggtga tggctgccta ccactgcggc gcagaatggg
     251  caatagcgat gggcgatgac gccctggagt cagcttgctc gaacctcgag
     301  cgttataaat cgctcggttt caaagtcgag gagtcctcaa aactggaatt
     351  ctgttctcac acttttgaga aagaggacct cgccattccg gtcaacaagg
     401  ccaaaatgct ttacaagctc atacatgggt atgaaccgga atgcggcaac
     451  gtggaagtgc tgatcaatta cttggccgcc tgtttctcaa ttctgaatga
     501  gttgcggtcc gatccttccc ttgtcgaaac tctccaccag tggctggtcc
     551  ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca
     601  agcacacacg agttgcaagc attggaagta taagtctcgt taccaagagt
     651  ccacacaata gattacaaat ttctcgcagg attttctagc ggtctattgt
     701  ctgcagtgcc agttacggta ataggactct attttgtcta cctaaagatt
     751  tcagcacacg tgcgatcaat tgttaatgaa tacggccgtg gctagaaatc
     801  aaaatgcagg gaggcggagg cgaagaaatc agcgctctat acggcgcgac
     851  cgcgtggttg tggtcaaccc ctctggggga ccatcacgcg gaagacgaca
     901  acgaagaaac cgccgacgct ctaatcgagg aggcagagct agaggaggga
     951  gcccaggcga aacattcgta ttttcaaagg acaatctcac gggcagttcc
    1001  tcaggaagta tcaccttcgg gccgtctcta tcagagagcc cagcattcag
    1051  ctctggaata ctcaaggcct accatgaata taagatcatc atggtccagc
    1101  tggagttcat ctccgaggcc tcttccacct cctcgggctc catctcttat
    1151  gagttggacc cccactgcaa gcttagctcc ctccaatcca cgattaataa
    1201  atttggaatc accaagaatg gaatgcgacg ttgggcagct aagcagatca
    1251  acgggttgga atggcatgac gcaactgagg accaattcaa aatcctctat
    1301  aaggggaacg gatcttcctc ggttgcaggc agcttcagga tcaccatcaa
    1351  gtgccaggtc