Sequence of DPV Cucurbit aphid-borne yellows virus

Cucurbit aphid-borne yellows virus pM070910-5 RdRp (RdRp) and coat protein (CP) genes, partial cds.

ACC No: EU244319

Dated: 2009-09-29 | Length: 1360 | CRC: -162348574

                
ID   EU244319; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
XX
AC   EU244319;
XX
DT   01-JAN-2009 (Rel. 98, Created)
DT   29-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Cucurbit aphid-borne yellows virus pM070910-5 RdRp (RdRp) and coat protein
DE   (CP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1360
RA   Shang Q.X., Xiang H.Y., Han C.G., Li D.W., Yu J.L.;
RT   "Distribution and molecular diversity of three cucurbit-infecting
RT   poleroviruses in China";
RL   Virus Res. 145(2):341-346(2009).
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RN   [2]
RP   1-1360
RA   Shang Q., Xiang H., Han C., Li D., Yu J., Yang D., Yang C.;
RT   "Distribution and molecular diversity of two distinct poleroviruses
RT   infecting cucurbits in China";
RL   Unpublished.
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RN   [3]
RP   1-1360
RA   Han C.;
RT   ;
RL   Submitted (24-OCT-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West
RL   Road, Haidian District, Beijing 100094, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1360
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="squash"
FT                   /isolate="Shanxi"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /clone="pM070910-5"
FT                   /db_xref="taxon:91753"
FT   gene            <1. .576
FT                   /gene="RdRp"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp"
FT                   /db_xref="GOA:B8PVZ5"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:B8PVZ5"
FT                   /protein_id="ABY75273.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLYCISNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAIAMGDDALESACSNLERYKS
FT                   LGFKVEESSKLEFCSHIFEKEDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFS
FT                   ILNELRSDPSLVETLHQWLVLPVQPQKI"
FT   gene            776. .>1360
FT                   /gene="CP"
FT   CDS             776. .>1360
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B8PVZ6"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:B8PVZ6"
FT                   /protein_id="ABY75274.1"
FT                   /translation="MNTVAARNQNAGRRRRRNQRPIRRDRVVVVNPSGGPSRGRRQRRN
FT                   RRRPNRGGRARGRSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
XX
SQ   Sequence 1360 BP; 373 A; 343 C; 337 G; 307 T; 0 other;

eu244319 Length: 1360  29-SEP-2009  Type: N  Check: 7492  ..

       1  agcgtttcgg actggcttct tgaagatgat atggaagtcc gaaaccgcct
      51  gacgctagat ttgaacgaaa ccacgcgccg attacgagca gcatggttat
     101  attgcatatc aaacagcgtc ctctgccttt ctgatggaac attattagcg
     151  cagagagtcc caggcgtgca gaagagtggc agctacaata cgtcatcgag
     201  taattcccgt attcgggtga tggctgccta ccactgcggc gcagaatggg
     251  caatagcaat gggcgatgac gccctggagt cagcttgctc gaacctcgag
     301  cgttataaat cgctcggttt caaagtcgag gagtcctcaa aactggaatt
     351  ctgttctcac atttttgaga aagaggacct cgccattccg gtcaacaagg
     401  ccaaaatgct ttacaagctc atacatgggt atgaaccgga atgcggcaac
     451  gtggaagtgc tgatcaacta cttggccgct tgtttctcaa ttctgaatga
     501  gttgcggtcc gatccttccc ttgtcgaaac tctccaccag tggctggtcc
     551  ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca
     601  agcacacacg agttgcaagc attggaagta caagtctcgt taccaagagt
     651  ccacacaata gattataaat ttctcgcagg attttctagc ggtctattgt
     701  ctgcagtacc agtcacggta ataggactct attttgtcta cctaaagatt
     751  tcagcacacg tgcgatcaat tgttaatgaa tacggtcgcg gctagaaatc
     801  aaaatgcagg gaggcggagg cgaagaaatc agcgccctat acggcgcgac
     851  cgcgtggttg tggtcaaccc ctctggggga ccatcgcgtg gaagacgaca
     901  acgaagaaac cgccgacgcc ctaatcgagg aggcagagct agaggaagga
     951  gcccaggcga aacattcgta ttttcaaagg acaatctcac gggcagttcc
    1001  acaggaagta tcaccttcgg gccgtctcta tcagagagcc cagcattcag
    1051  ctctggaata ctcaaggcct accatgaata taagatcatc atggtccagc
    1101  tggagttcat ctccgaggcc tcttccacct cctcgggctc catctcttat
    1151  gagttggacc cccactgcaa gcttagctcc ctccaatcca cgattaataa
    1201  atttggaatc accaagaatg gattgcgacg ttggacagct aagcagatca
    1251  acgggatgga atggcatgac gcaactgagg accaattcaa gatcctctac
    1301  aaagggaacg gatcttcctc ggttgcaggc agcttcagga tcaccatcaa
    1351  gtgccaggtc