Sequence of DPV Cucurbit aphid-borne yellows virus

Cucurbit aphid-borne yellows virus pM071009-2 RdRp (RdRp) and coat protein (CP) genes, partial cds.

ACC No: EU244325

Dated: 2009-09-29 | Length: 1360 | CRC: 655819152

                
ID   EU244325; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
XX
AC   EU244325;
XX
DT   01-JAN-2009 (Rel. 98, Created)
DT   29-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Cucurbit aphid-borne yellows virus pM071009-2 RdRp (RdRp) and coat protein
DE   (CP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1360
RA   Shang Q.X., Xiang H.Y., Han C.G., Li D.W., Yu J.L.;
RT   "Distribution and molecular diversity of three cucurbit-infecting
RT   poleroviruses in China";
RL   Virus Res. 145(2):341-346(2009).
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RN   [2]
RP   1-1360
RA   Shang Q., Xiang H., Han C., Li D., Yu J., Yang D., Yang C.;
RT   "Distribution and molecular diversity of two distinct poleroviruses
RT   infecting cucurbits in China";
RL   Unpublished.
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RN   [3]
RP   1-1360
RA   Han C.;
RT   ;
RL   Submitted (24-OCT-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West
RL   Road, Haidian District, Beijing 100094, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1360
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="suakwa"
FT                   /isolate="Henan"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /clone="pM071009-2"
FT                   /db_xref="taxon:91753"
FT   gene            <1. .576
FT                   /gene="RdRp"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp"
FT                   /db_xref="GOA:B8PW07"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:B8PW07"
FT                   /protein_id="ABY75285.1"
FT                   /translation="SVSDWLLKDDMEVRNRLTLDLNETTRRLRAAWLYCISNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKS
FT                   LGFKVEESSKLEFCSHIFEREDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFS
FT                   ILNELRSDPSLVETLHQWLVLPVQPQKI"
FT   gene            776. .>1360
FT                   /gene="CP"
FT   CDS             776. .>1360
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B8PW08"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:B8PW08"
FT                   /protein_id="ABY75286.1"
FT                   /translation="MNTAAARNQNAGRRRRRSQRSIRRDRVVVVNPSGGPPRGRRQRRN
FT                   RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAARQINGMEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
XX
SQ   Sequence 1360 BP; 367 A; 340 C; 342 G; 311 T; 0 other;

eu244325 Length: 1360  29-SEP-2009  Type: N  Check: 1293  ..

       1  agcgtttcgg actggcttct taaagatgat atggaagtcc gaaaccgcct
      51  gacgctagat ctaaacgaaa ccacgcgccg tttacgagca gcgtggttat
     101  attgcatatc aaatagcgtc ctctgccttt ctgacggaac attattagcg
     151  cagagagtcc caggcgtgca gaagagtggc agctacaata cgtcatcgag
     201  caattcccgt attcgggtga tggctgccta ccactgcggc gcagaatggg
     251  caatggcgat gggcgatgac gccctagagt cagcttgctc gaacctcgag
     301  cgttataaat cgctcggttt caaagtcgag gagtcctcaa aactggaatt
     351  ctgttctcac atttttgaga gagaggacct cgccattccg gtcaacaagg
     401  ccaaaatgct ttataagctt atacatgggt atgagccgga atgtggcaat
     451  gtggaagtgc tgattaatta cttggccgcc tgtttctcaa ttctcaatga
     501  gctgcggtct gatccttccc ttgtcgaaac tctccaccag tggctggtcc
     551  ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca
     601  agcacacacg agttgcaagc attggaagta taagtctcgt taccaagagt
     651  ccacacaata gattataaat ttctcgcagg attttctagc ggtctattgt
     701  cagcagtacc agtgacggta ataggactct attttgtcta cctaaagatt
     751  tcagcgcacg tgcgatcaat tgttaatgaa tacggccgcg gctagaaatc
     801  aaaatgcagg gaggcggagg cgaagaagtc agcgctctat acggcgcgac
     851  cgcgtggttg tggtcaaccc ctctggggga ccaccgcgcg gaagacgaca
     901  acgaagaaac cgccgacgcc ctaatcgagg aggcagagct agaggaagga
     951  gcccaggcga aacattcgta ttttcaaagg acaatctcac gggcagttcc
    1001  tcaggaagta tcaccttcgg gccgtctcta tcagagagcc cagcattcag
    1051  ctctggaata ctcaaggcct accatgaata taagatcatc atggtccagc
    1101  tggagttcat ctccgaggcc tcttccacct cctcgggctc catctcttat
    1151  gagttggacc cccactgcaa gcttagctcc ctccaatcca cgattaataa
    1201  atttggaatc accaagaatg gattacgacg ttgggcagct aggcagatca
    1251  acgggatgga atggcatgac gcaactgagg accaattcaa gatcctctat
    1301  aaagggaacg gatcttcctc ggttgcaggc agcttcagga tcaccatcaa
    1351  gtgccaggtc