Sequence of DPV Chapare virus
Chapare virus strain 810419 segment S, complete sequence.
ACC No: EU260463
Dated: 2008-04-03 | Length: 3357 | CRC: -104390250
ID EU260463; SV 1; linear; genomic RNA; STD; VRL; 3357 BP.
XX
AC EU260463;
XX
DT 03-APR-2008 (Rel. 95, Created)
DT 03-APR-2008 (Rel. 95, Last updated, Version 1)
XX
DE Chapare virus strain 810419 segment S, complete sequence.
XX
KW .
XX
OS Chapare virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses; unclassified New world arenaviruses.
XX
RN [1]
RP 1-3357
RA Erickson B.R., Albarino C., Nichol S.T.;
RT "Chapare virus, a newly discovered arenavirus isolated from a fatal
RT hemorrhagic fever case in Bolivia";
RL PLOS Pathog. 4(4):e1000047-e1000047(2008).
XX
RN [2]
RP 1-3357
RA Erickson B.R., Albarino C., Nichol S.T.;
RT ;
RL Submitted (02-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600
RL Clifton Road, Atlanta, GA 30333, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3357
FT /organism="Chapare virus"
FT /segment="S"
FT /specific_host="Homo sapiens"
FT /strain="810419"
FT /mol_type="genomic RNA"
FT /country="Bolivia:Samuzabeti, Chapare Province, Cochabamba
FT Department"
FT /isolation_source="human sera"
FT /collection_date="2003"
FT /db_xref="taxon:499556"
FT primer_bind 1. .20
FT CDS 59. .1513
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /protein_id="ABY87068.1"
FT /translation="MGQLVSFFQEIPNIIQEAINIALIAVSLIAILKGLVNLWKSGLFQ
FT LLVFLILAGRSCSFKIGRSTELQNITINMLKVFEDHPISCTVNKTLYYIRESENATWCV
FT EIAALDMSVLLSPHDPRVMGNLSNCVHPDIKHRSELLGLLEWILRALKYDFLNYPPLLC
FT EKVTSSVNETRIQINVSDSAGSHDFKETMLQRLAILFGTKLMFDKTPKQFIVIRNQTWV
FT NQCKSNHVNTLHLMMANAGHAVKLRRLQGVFTWTITDAAGNDMPGGYCLERWMLVTSDL
FT KCFGNTALAKCNLNHDSEFCDMLKLFEFNKKAIESLNDNTKNKVNLLTHSINALISDNL
FT LMKNRLKELLDTPYCNYTKFWYVNHTITGEHSLPRCWMVKNNSYLNESEFRNDWILESD
FT HLLSEMLNKEYFDRQGKTPITLVDICFWSTLFFTTTLFLHLVGFPTHRHIQGEPCPLPH
FT KLNSNGGCRCGRYPELKKPTTWHRKH"
FT CDS complement(1609. .3297)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /protein_id="ABY87069.1"
FT /translation="MSNSKEIPSFRWTQSLRRELSSFTIPVKSDVLKDAKMIADGLDFS
FT QVALVQRVLRKTKRTDGDLDKLRDLNREVDNLMAMKSAQKNTILKLGDLNKSELMDLAS
FT DLEKLKKKVGQTERSPVGGVYLGNLSQSQLSKRTDLLRRLGFQQPQVRSTGVVRIWDVA
FT DPTRLNNQFGSVPALTIACMTVQGGDTMGNVVQALTSLGLLYTVKFPNLADLEKLAAEH
FT DCLQIITKDESAINISGYNFSLSAAVKAGATFLDGGNMLETIKVTPDNFSTIIKTVLGV
FT KKRENMFIDERPGNRNPYENLLYKLCLSGEGWPYIGSRSQVKGRSWENTTVDLSLKPTQ
FT GPKAPEKVGLNVRLSHLTEIQESVVREAMSKINPSHTTWIDIEGTSNDPVELALYQPES
FT GNYILCYRKPHDEKGFKNGSRHSHGMLLKDLESAQPGLLSYIIGLLPQDMVLTAQGSDD
FT IKRLLDTHGRKDLKVVDVKLSSDQARNYEEQVWSDFGHLCKKHNGVVVPKKKKDKDPSQ
FT STEPHCALLDCLMFQSVIDGQPPQIKLQSLLPEVLLFTMKPAFAI"
FT primer_bind complement(3338. .3357)
XX
SQ Sequence 3357 BP; 915 A; 746 C; 698 G; 998 T; 0 other;
eu260463 Length: 3357 03-APR-2008 Type: N Check: 3092 ..
1 tcgcacagtg gatcctaggc gctttttggt cacgcataaa tcgtgagcaa
51 gaataaacat gggtcaactt gtgagtttct ttcaggaaat tcctaacatc
101 atacaggaag caatcaacat tgctctaata gctgtcagcc tcattgctat
151 cctaaaaggg ttggtcaatc tgtggaaaag tggtttgttt caactcctgg
201 tcttccttat tctagctgga aggtcctgct cattcaaaat tggaagatcc
251 acagaactcc aaaacatcac aataaacatg ttaaaggtct ttgaggacca
301 tcctatttct tgcacagtga acaaaactct ttattacatc cgtgaaagtg
351 agaatgcaac atggtgtgta gagattgctg cactggacat gtctgtcttg
401 ctctcgccac atgatccacg tgtaatgggc aacctatcaa actgtgttca
451 cccagacatt aaacatagat cagaacttct aggtctattg gagtggattt
501 tgagagctct gaaatatgat tttctaaatt atccacccct cttgtgtgaa
551 aaagtgacat catctgtcaa tgaaacacgc attcagataa atgtgagcga
601 tagtgcaggt tctcatgatt tcaaagaaac catgctccaa aggctggcca
651 tactatttgg cacaaaattg atgtttgata aaacacctaa gcagttcata
701 gttatcagaa atcagacttg ggtgaatcag tgcaagtcca atcatgtcaa
751 cacgttgcat ttgatgatgg ctaatgctgg gcatgctgtt aaattaagaa
801 gattgcaagg ggtgttcact tggacgatca cagatgctgc tggcaacgac
851 atgcctggag gttattgttt ggaaaggtgg atgttagtca catctgacct
901 gaaatgtttt ggcaacactg ctcttgcaaa gtgtaactta aatcatgact
951 ctgagttctg tgacatgttg aaactgtttg aatttaacaa aaaagcaatt
1001 gagtcattga atgacaacac aaagaacaaa gtcaatctat taacacattc
1051 cattaatgct ttaatttctg acaatctttt gatgaagaat agattaaaag
1101 agttattgga cactccctac tgcaactaca caaaattctg gtatgtcaac
1151 cacaccatca caggagagca ttcacttcca cgctgttgga tggttaaaaa
1201 caacagctac ctcaatgaaa gtgaatttag aaatgattgg attcttgaga
1251 gtgaccactt gttgtccgaa atgttgaaca aagagtattt tgacagacaa
1301 gggaaaaccc caataacact tgttgacatc tgcttttgga gcacactgtt
1351 cttcacaaca acattgtttc tccatctagt aggcttccca actcacagac
1401 acattcaggg agaaccttgc ccactgcctc acaagctcaa cagcaatggt
1451 ggatgcaggt gtggcagata tccagaactc aagaaaccaa caacctggca
1501 caggaaacac tgaacttgag tggctcccaa cccaccgtcc cgggcatagc
1551 ccgggacggt gcggcctccc agtccgcggc aaatgccgcg gactgggagg
1601 gcatgggcct atatggcgaa tgccggcttc attgtaaaca gcagcacttc
1651 tggtagaaga ctctgcagtt tgatctgtgg tggctgccca tctatcaccg
1701 actggaacat cagacagtca agcagggcgc aatgtggttc tgttgattgt
1751 gaggggtctt tgtctttttt cttttttggc accacaaccc cattgtgctt
1801 cttacagagg tggccgaaat cagaccagac ctgctcctca tagtttctgg
1851 cttgatcaga acttagtttc acatccacga ccttgagatc tttgcgacca
1901 tgtgtgtcta aaagtctttt gatgtcatca gagccttggg cggttaggac
1951 catgtcttgt ggtaacaacc ctatgatgta gctaaggagt ccaggttggg
2001 ccgattccaa gtcctttagt agcattccat gtgaatgtct acttccattc
2051 ttgaatcctt tctcatcatg aggttttctg taacagagta tgtaattacc
2101 tgattccggt tgatataatg ctagctcaac agggtcattg ctggttcctt
2151 caatgtcaat ccatgttgtg tgggaaggat taattttgct catcgcctct
2201 ctaacaactg actcttggat ctctgtcaga tgagagagtc tcacatttaa
2251 ccccactttc tcaggtgctt tcggtccttg tgttggcttc aagctaagat
2301 caacagttgt attttcccaa gacctacctt tcacttgaga cctggagcct
2351 atataaggcc aaccttcacc tgataggcac aatttatata ataggttttc
2401 ataggggttc ctgtttcctg gtctctcatc gataaacata ttttctcttt
2451 tctttacacc caaaactgtc ttgataatgg ttgagaaatt gtctggagtc
2501 acctttattg tttctaacat gtttccccca tccagaaaag tggccccggc
2551 cttaacagct gctgaaaggc tgaaattgta tcctgatata ttgattgcac
2601 tttcatcctt agtgatgatc tgaaggcaat catgttcggc agccaacttt
2651 tccagatcag ctaggtttgg gaacttcaca gtgtaaagga gacctaatga
2701 tgttaatgct tggacaacat ttcccattgt atcgcccccc tgaacggtca
2751 tgcaggctat tgtcagtgca ggaactgagc cgaactggtt gttcagtctg
2801 gtgggatcag ccacgtccca aattctaaca acacctgtgg atctcacctg
2851 tggttgttga aatcctagtc tcctcaaaag atcagttctt ttggataact
2901 gtgattggct aagattccca aggtagaccc cacctacagg agatctctct
2951 gtctgtccaa ctttcttttt caacttttct agatcagatg caagatccat
3001 gagctcagat ttgttgagat caccaagctt caggatggtg ttcttctgag
3051 cacttttcat ggccatcagg ttgtccactt ctctattgag gtctcttagc
3101 ttgtccaaat ctccatcggt tctttttgtt tttctaagaa ctctctgaac
3151 aagtgcaact tggctaaaat cgagaccatc tgcaatcatt ttagcatctt
3201 ttagcacgtc tgacttcaca ggaattgtga aactgctcaa ttctcgtctt
3251 aaagactgag tccagcggaa acttggaatc tcttttgagt tgctcatgat
3301 ggaaaggctt tctgataaga aattgcttac caaaaatgcc taggatccac
3351 tgtgcga