Sequence of DPV Chapare virus
Chapare virus strain 810419 segment L, complete sequence.
ACC No: EU260464
Dated: 2008-04-03 | Length: 7107 | CRC: 1510454248
ID EU260464; SV 1; linear; genomic RNA; STD; VRL; 7107 BP.
XX
AC EU260464;
XX
DT 03-APR-2008 (Rel. 95, Created)
DT 03-APR-2008 (Rel. 95, Last updated, Version 1)
XX
DE Chapare virus strain 810419 segment L, complete sequence.
XX
KW .
XX
OS Chapare virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses; unclassified New world arenaviruses.
XX
RN [1]
RP 1-7107
RA Erickson B.R., Albarino C., Nichol S.T.;
RT "Chapare virus, a newly discovered arenavirus isolated from a fatal
RT hemorrhagic fever case in Bolivia";
RL PLOS Pathog. 4(4):e1000047-e1000047(2008).
XX
RN [2]
RP 1-7107
RA Erickson B.R., Albarino C., Nichol S.T.;
RT ;
RL Submitted (02-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600
RL Clifton Road, Atlanta, GA 30333, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7107
FT /organism="Chapare virus"
FT /segment="L"
FT /specific_host="Homo sapiens"
FT /strain="810419"
FT /mol_type="genomic RNA"
FT /country="Bolivia:Samuzabeti, Chapare Province, Cochabamba
FT Department"
FT /isolation_source="human sera"
FT /collection_date="2003"
FT /db_xref="taxon:499556"
FT primer_bind 1. .19
FT CDS 73. .369
FT /codon_start=1
FT /product="Z protein"
FT /protein_id="ABY87070.1"
FT /translation="MGNTKTKDRQYQSNSSQPTNTSAPVLLRRQAEPSLYGRHNCRCCW
FT FADTNLVNCSNHYLCLKCLNTMLRRSNLCDICGEELPTTIIVPVEPSAPLPGQ"
FT CDS complement(442. .7068)
FT /codon_start=1
FT /product="L polymerase"
FT /protein_id="ABY87071.1"
FT /translation="MDTFLLELKDLVRKYVPELVELSFQKDALLSQVHPRLVLVEGFKL
FT LSLLVELESCKVNACRHNFEQKFVDVILSDHGVICPTLPKVTPDGFNLMGKTLILLETF
FT VRVNPNDFERKWKADMSKLMSLKDDLARVGITMVPVVDGRGSYNTSYLPEWATERLRWL
FT LIEILKGVKATSEIEIEDQEYQRLIHSLAKANNQSMGFENLEFLKRRLLSYDQLLDTSL
FT LVGIRNDVRESKIIEELIKIKLWYKTEIFNKGLGKFKRTNKSNLLSDLLKIGLHQDSDT
FT INCMFCSCKILELCYTLSNKLSIDHSKEEMKDDEVGGKQPVCISYSSLLSICNKIKGSK
FT IFNTRRNTLLFLDLIMLNFIVDEMIQDDSVVDSLRGAGFIIGQMVVLVNDRALDILAAM
FT KLIRHKLGNSKDWLSVCGKVLKRYDEEMWKEVKTYIKEPDFDMLFQLAKSLVSERPIMR
FT YTVHKDNESRCLHQNSLNISDQSFKAMLKALSHVSLSLINSMKTSFSSRLLINEKDYSR
FT YYGNVRLKECYVQRFPISSRVTGYLFYQKTGERSRCYSLYISENGELSELGSFYCDPKR
FT FFLPVFSEDTIVSMCNEMVCWLDFDEQLVELVKPKLRSLVLLLLCSPSKRNQTFIQGLR
FT YFIMAYANQAHHVDLMSKLEIECKSSSEIQLQRLAVTLFELVLSTGDDKDFGFARRFKF
FT LLNISYLCHFVTKETPDRLTDQIKCFEKFLEPKLNFNSVIVNPSLSGILTEAQEEIMTS
FT SVNRFFQKNLTNISDVKEPGVSKELISFCVSLFNRGKLRVSGDLKVDPFRPSFTSTALD
FT LSSNKSVVVPKLDELGNALSKYDKQMMISSCVTTLTEMFKTKGRYNLDPDSLDFLVLKN
FT LSNLVSVSVSKGQMKEELSLLYDTLSEEQLESFEQIKQDVQLTLSRMKESKCNNVGLGN
FT SRKVNKHLSKSELLETLWSPYQVLRAIKNEVSIHEIKDFDPDIIEHETVKKLCDEVYQS
FT SNKLEFFLEEPLKSVPLEFLLKNLTTIAYEETDYLECFKYLLIQGGFDQKLGSYEHKSR
FT SRLGLSSEALRVQEDARVSTRESNAEAIAKKLDKTFFTSAALRNLCFYSEDSPTEFTSV
FT STNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEMITSSMRYSCLNSEKEF
FT ERAICDMKMAVNNGDISMSLDHSKWGPHMSPALFYSFLANLNLTEPKSRAKLNLGPLLD
FT ILKWHLHKVVEVPFNVAQAYCVGKIKRSLGLMECQTSSVTEQFYHNFLQRENEIPSHIM
FT SVLDMGQGILHNLSDLYALITEQFLNYAIYKLYDVDVLSYTSSDDQISIMKLPAYEHID
FT EDSPDWLEIVCFHEYLSSKLNKFVSPKSVVGNFVAEFKSRFFVMGEETPLLTKFVAAAL
FT HNVRCKTPTQLAETVDTICDQCVANGVSVSIVSKISERVNRLVKYSGFGETPFLSVVKQ
FT DVKDWSDGSRGYRLQRNIENSLRDSKILEVMRKGARKVFLGIKNGRIFEENLIGLIGRG
FT GDEALRGFLLYAEVDKDEIENALRYRWVNTSTFGDLRLVLRTKIMSSKRVLERESIPSL
FT VKTLQSRMSKNFTKGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGSGGFIYL
FT KDIYKKITTCECKHCSVWRGVVYCEKSVEKIFQFTRSIMWDYFTLVLTNACELGEWVFS
FT SVKLPTKATILDNPNLFWAIKPRTHKHIEDRLGLNHILHSIKKNYPQLFEEHLAPFMSD
FT LQSNQMINPSKIKFLDICVALDMVNENLGIIGHLLRGRNNTIYIVKQSECAGAHVRQAD
FT YVDQDLGLSPQQICYNFKVQFLLSSMINPLIVSTSTLRSFFWFNEVLSIEEDDQIELGE
FT LTDFTLSIKTYNLERAMTLDDMTMGYVCSTLLDEVVSLESLDSCQDLAALQFKRQDLSD
FT FFRDLGEDFVKVGLNIQIVHQRRSTKFDISRKVVYTFRILLLINLSEHLREEVKIPVQS
FT LSLYASGAGNNHLFLDGVSMIPTLPLFNGSKSVNLAKVLIEHELATSNDFKLLECVIMD
FT FSNFLDELRDKYSYVLVGPEEQENPIVFQNGAFMADNQKLSYMRVEIFGDTIVKALGAL
FT ETDREIENLLCNLWPYLKSIKKTIDFNQADFEMIYDLHRTALLKSLCQMDSWIEFTSFS
FT VAYSKHLQDLVVSDNLGNLRLKGITCRPFRRDQCIQEIE"
FT primer_bind complement(7089. .7107)
XX
SQ Sequence 7107 BP; 2148 A; 1575 C; 1171 G; 2213 T; 0 other;
eu260464 Length: 7107 03-APR-2008 Type: N Check: 9099 ..
1 cgcacagtgg atcctaggcg ttactaggtc ttcaattctt gaactaattg
51 ttttcgggtt tctactcaag ctatgggtaa caccaaaaca aaggacagac
101 agtatcaatc gaactcaagc caacccacaa acacatctgc accagttctg
151 ctgagaaggc aggcagaacc aagtctgtat gggagacaca actgcagatg
201 ctgttggttt gcagacacaa acctagtcaa ttgttccaac cactaccttt
251 gccttaaatg tctgaacaca atgttaagaa gatccaatct ctgtgacata
301 tgcggtgaag aacttcccac aacaatcatt gttccagtgg aaccatcagc
351 accactgccc ggacaataag gcatcctcga atgcccccgg ggggccccaa
401 tggggccccc cgcggggagt ccccgggggc gaatgtggag cttactcgat
451 ctcctgaata cattggtctc ttctgaaggg ccgacaggtg atgcctttca
501 accttaggtt acctaggttg tcactgacaa ccaaatcctg taggtgctta
551 ctataagcta cactgaaact agtaaactct atccaactat ccatttggca
601 tagagacttt aacaaagcag ttctatgcaa atcataaatc atctcaaagt
651 ctgcttgatt aaaatcaatt gttttcttta tggatttcaa atatggccag
701 agattgcata gcaagttttc aatttctctg tctgtctcca gtgctccaag
751 agctttcaca atggtatcac caaaaatctc caccctcatg tatgatagct
801 tctgattatc agccatgaag gcaccatttt ggaacacaat ggggttttcc
851 tgttcttccg gcccaactag aacgtaagag tatttgtccc tcagttcatc
901 caaaaagttt gagaagtcca tgatcacgca ttctaacaat ttaaaatcat
951 tggatgttgc caactcatgt tctattaaaa cttttgctaa attcacactc
1001 tttgatccat taaagagagg cagtgtaggt atcattgaga caccatctag
1051 aaaaaggtgg ttgtttccgg caccagaggc atacaaactc aaagattgta
1101 ctggaatttt tacctcttct cttaaatgtt cactcagatt tattaaaagc
1151 agaatcctaa aagtgtacac aacttttctt gaaatgtcaa actttgttga
1201 tctcctctga tgaacgatct gaatgtttaa ccccacttta acaaagtctt
1251 ctccaagatc cctgaaaaaa tcagacaaat cctgcctctt aaactgtagt
1301 gctgccaaat cttgacaaga atcaagggat tctaagctga ctacttcgtc
1351 taataaagtt gaacaaacat agcccattgt catgtcatcc aaagtcatgg
1401 ccctctcaag attgtatgtc ttaatagaga gtgtgaagtc tgtgagttcc
1451 cccaattcta tttgatcatc ttcctcaatg cttaaaacct cattaaacca
1501 aaagaaagac ctcaaagttg aagtggacac aatgagaggg ttaatcattg
1551 aggaaagcaa aaattggacc ttaaaattgt aacaaatttg ctgtgggctt
1601 aaacccagat cttggtcaac ataatcagct tgtcgtacat gagcaccagc
1651 acactcactt tgtttaacaa tgtatatggt gttatttctc cctctcagga
1701 ggtgaccaat tatccccaag ttctcattta ccatatccaa tgccacacaa
1751 atgtcaagaa actttatctt cgatggattt atcatctgat ttgattgaag
1801 atcactcata aatggagcca gatgttcctc aaacaattga ggataattct
1851 tctttatcga atgtagtata tgattcaaac caagcctatc ctctatgtgt
1901 ttgtgtgttc tgggttttat tgcccagaaa agattggggt tatccaaaat
1951 ggtagcctta gttggaagtt ttacgcttga gaaaacccat tcacccaact
2001 cacaggcatt ggttaaaaca agtgtgaaat aatcccacat aattgacctt
2051 gtaaactgga agatcttttc cactgatttc tcacagtaca caacacccct
2101 ccacactgaa caatgtttac attcgcacgt agtgatcttc ttgtaaatgt
2151 ctttcaagta gatgaaacca ccacttccat cccttacaca cttgcttccc
2201 atactcttgc agaatcctat aaaccctgag gccactgatg attgaaaagc
2251 agatttattt atagactccg ctaatatctt ctttgcccct ttcgtaaagt
2301 tttttgacat tcttgattgt aaagtcttca ctagactcgg gatgctttcc
2351 ctctctaaaa ctcttttact tgacattatc ttggtcctta agactaacct
2401 cagatcacca aatgttgatg tgttcaccca tctgtatctc aatgcgttct
2451 caatctcatc cttatccact tcagcatata aaagaaaacc tcgcaaggcc
2501 tcatcacctc ccctacctat caagccaatt aagttctctt caaagatacg
2551 tccatttttt attcctagaa acactttcct agcacctttt ctcatcactt
2601 ctaaaatttt agaatctctg agggagttct ctatattcct ctgcaaacga
2651 tagcctctag aaccatcaga ccaatctttt acatcttgtt tcaccaccga
2701 aaggaatggt gtttctccaa agcctgaata cttaactaac cgattgactc
2751 tctctgaaat tttagaaacg atggaaacac taacaccatt tgcgacacat
2801 tggtcacaaa tggtatctac agtttctgcc agctgtgtgg gtgttttgca
2851 cctgacattg tgaagagcag ctgcaacaaa cttagttaac aatggagttt
2901 cttcccccat aacaaagaac ctcgacttga actccgccac aaagttccca
2951 acaacacttt tgggactgac aaatttgttc aactttgatg atagatattc
3001 atgaaaacat acaatttcca accagtcagg gctatcctcg tctatgtgct
3051 catatgcagg caatttcatt atagatatct gatcatcact ggaagtgtaa
3101 gataacacat ccacatcata cagtttgtaa attgcatagt tgagaaactg
3151 ttccgttatt aaagcatata agtcagataa gttgtgtaaa attccttgtc
3201 ccatatctaa tacagacata atgtgacttg gaatttcatt ttccctttgt
3251 aagaagttgt ggtagaactg ttctgttaca cttgatgttt gacattccat
3301 gagcccaaga cttcttttga ttttccccac acaatatgcc tgagcaacat
3351 taaatggtac ctcgacaact ttatgaagat gccatttaag gatgtccaat
3401 agtggtccaa gattcaactt agctctactt ttgggttctg tcaaattgag
3451 attggctaaa aaggaataaa ataatgcagg gctcatgtgg gggccccatt
3501 ttgaatgatc caatgacata ctaatatcac cattgttcac agccatcttc
3551 atgtcacaga tggccctctc aaactctttc tctgaattta aacacgaata
3601 tctcatagat gatgtgatca tttcagaaaa atcctctact aatctagtca
3651 ttaattttgt attcaagtca ccaacataaa gctccctgtt agatccaact
3701 tgctccttat aacttaatcc aaattttaga tttcctgtat ttgtgcttac
3751 gcttgtgaac tctgtcggtg aatcttctga gtaaaaacag aggtttctta
3801 gagctgcact tgtaaaaaac gttttgtcaa gctttttggc tatggcctct
3851 gcattgcttt ctcttgtgct cactcgggca tcttcctgca ctctaagtgc
3901 ttctgaactc aaacctaatc tagacctact tttgtgctca tagctaccta
3951 atttttgatc aaaaccccct tgtatcagca aatacttgaa acactctaag
4001 tagtcagttt cctcataagc aatagttgtt agatttttta acaaaaattc
4051 aagtgggaca gatttcaaag gttcctctaa gaagaattct aacttgttac
4101 tggactgata cacctcgtca cacaactttt ttacagtttc gtgttcaata
4151 atatcaggat caaagtcttt aatctcatga attgaaacct catttttaat
4201 agccctaaga acctggtaag gtgaccagag tgtttccagc agctcacttt
4251 tgctaaggtg cttattgact ttcctagaat ttcctaaacc tacattatta
4301 cactttgatt ctttcattct acttaaagta agctgaacat cttgcttgat
4351 ctgctcaaat gattccaatt gttcttctga taatgtgtca tacaacaagg
4401 atagctcttc tttcatttga ccttttgaaa cactcacact aactaaattg
4451 gaaaggttct tgaggaccaa gaaatctaag gaatctgggt ccaagttgta
4501 ccttcccttc gttttgaaca tttcagtaag agttgttaca caagatgaga
4551 tcatcatttg tttgtcatac ttgcttaagg cattacccaa ctcatctaac
4601 ttagggacaa caacactttt attactagat aagtccaaag cagtactagt
4651 gaatgatggg cgaaaagggt caacttttag atcaccagac acccttaact
4701 ttcccctgtt aaaaagggaa acacagaaac tgattaattc cttagagact
4751 cccggttctt taacatctga tatgttagtc aaatttttct ggaaaaacct
4801 gttaacgcta gatgtcataa tctcttcttg ggcttctgtt aaaatcccgc
4851 ttaaagaagg attaactatg acactgttaa aattcagctt tggctcaagg
4901 aatttctcaa aacacttgat ctgatcagtt aatctatctg gtgtctcctt
4951 tgtcacaaaa tgacacagat aactaatatt cagtaaaaac ttaaaccttc
5001 tggcaaagcc aaaatcttta tcatcccctg ttgataagac caattcaaac
5051 agtgtcactg ctaacctttg caattgaatc tctgaactgg acttacactc
5101 aatctctaat tttgacataa gatcaacgtg atgagcctga ttagcgtaag
5151 ccattataaa atatctcagc ccttggataa atgtttggtt cctttttgaa
5201 ggtgagcaga gaaggagcag caccaaggat ctcagcttag gcttaaccag
5251 ctcaacaagt tgttcatcaa agtccaacca gcataccatt tcattgcaca
5301 tggacactat agtgtcttca gaaaaaacag gcaaaaagaa tctctttgga
5351 tcacaataaa aggatcctag ctcacttaat tcaccgtttt cagagatata
5401 aagagaataa caccttgatc tctcacccgt cttttgataa aataggtagc
5451 ctgtgactct acttgagatg gggaacctct gaacataaca ttccttgagc
5501 ctgacatttc cataatagcg agaatagtcc ttttcattaa ttaaaagtct
5551 agaggaaaaa gatgttttca tggaattgat cagagagagt gaaacatgtg
5601 acaaagcttt gagcatggct ttgaaacttt ggtcagagat attcaacgag
5651 ttttgatgga gacatcggct ttcgttgtcc ttatggacag tataacgcat
5701 tatgggtctt tcagaaacta aactctttgc caattggaag agcatgtcga
5751 agtcaggttc tttaatgtaa gtcttgacct ctttccacat ttcttcatca
5801 taccttttca aaactttccc acacacggac agccagtcct tactattccc
5851 taatttatgt cttatcagct tcattgctgc aaggatatca agagctctat
5901 cattgaccag gaccaccatt tgaccaatta taaaaccagc acccctgaga
5951 gaatctacca ctgagtcatc ttgtatcatt tcatccacaa tgaaattcag
6001 catgattagg tccaaaaaca gcaatgtatt tctcctagta ttgaagattt
6051 ttgaaccttt aatcttattg caaattgata ataaagaaga ataggaaatg
6101 cacactggct gcttacctcc aacctcatca tccttcattt cttcttttga
6151 atgatctatt gacagtttgt tggaaagtgt gtaacagagc tccagaattt
6201 tgcatgaaca aaacatgcaa tttatagtat cactatcttg atgcagacca
6251 attttcagaa gatcagataa taaattagac ttattagttc ttttaaattt
6301 ccctaaacct ttattaaaaa tttcagtctt ataccagagt ttgattttga
6351 tcagttcctc aattattttc gattctctca catcatttct tatacccact
6401 aataacgatg tgtctagcaa ttgatcatat gatagcagcc ttctctttag
6451 aaactctagg ttttcaaacc ccatactttg attattggct tttgccaaac
6501 tgtgtatcag cctttggtat tcctgatctt caatttctat ttctgaagtt
6551 gctttcaccc ctttcaagat ttcaatcaat agccatctca acctctcagt
6601 agcccattcc ggaagataac ttgtgttgta acttcctctt ccatcaacaa
6651 caggaaccat ggtgatgcca actctagcaa ggtcatcttt taatgacatg
6701 agtttgctca tatcagcttt ccacttccgt tcaaagtcat ttgggttgac
6751 tcttacaaaa gtttccaata agatgagagt cttacccatg agattgaaac
6801 catcgggcgt cactttggga agagtgggac agatcacacc atgatcagag
6851 aggatgacat ccacaaactt ttgctcaaag ttgtgtctgc aggcattgac
6901 cttgcaagac tccagttcaa ctaaaagtga caacaatttg aagccctcaa
6951 caaggaccag tctggggtgc acctgtgaaa gaagtgcgtc tttctggaaa
7001 gatagctcta ctaattctgg gacatacttt cttacaagat ccttcaattc
7051 cagtaaaaaa gtgtccatta ttcacttaga caaaattcgc ctaggatcca
7101 ctgtgcg