Sequence of DPV Cucurbit aphid-borne yellows virus

Cucurbit aphid-borne yellows virus clone pM061031-1 RdRp (RdRp) and coat protein (CP) genes, partial cds.

ACC No: EU262629

Dated: 2009-09-02 | Length: 1360 | CRC: -1604207579

                
ID   EU262629; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
XX
AC   EU262629;
XX
DT   02-SEP-2009 (Rel. 102, Created)
DT   02-SEP-2009 (Rel. 102, Last updated, Version 1)
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DE   Cucurbit aphid-borne yellows virus clone pM061031-1 RdRp (RdRp) and coat
DE   protein (CP) genes, partial cds.
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KW   .
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OS   Cucurbit aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
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RN   [1]
RP   1-1360
RA   Shang Q., Xiang H., Han C., Li D., Yu J.;
RT   "Distribution and molecular diversity of the poleroviruses infecting
RT   cucurbits in China";
RL   Unpublished.
XX
RN   [2]
RP   1-1360
RA   Han C.;
RT   ;
RL   Submitted (04-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL   Road, Haidian District, Beijing 100094, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1360
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="cucumber"
FT                   /isolate="Jiangsu"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /clone="pM061031-1"
FT                   /db_xref="taxon:91753"
FT   gene            <1. .576
FT                   /gene="RdRp"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp"
FT                   /protein_id="ABY84815.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSD
FT                   GTLLAQRIPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAIAMGDDALESACSNLGRYKS
FT                   LGFKVEESSKLEFCSHIFEKEDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFS
FT                   ILNELRSDPSLVETLHQWLVLPVQPQKI"
FT   misc_feature    577. .775
FT                   /note="intergenic NCR"
FT   gene            776. .>1360
FT                   /gene="CP"
FT   CDS             776. .>1360
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ABY84816.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGSSRGRRQRRN
FT                   RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKV
FT                   IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
XX
SQ   Sequence 1360 BP; 369 A; 344 C; 340 G; 307 T; 0 other;

eu262629 Length: 1360  02-SEP-2009  Type: N  Check: 7011  ..

       1  agcgtttcgg actggcttct tgaagatgat atggaagtcc gaaaccgcct
      51  gacgctagat ttgaacgaaa ccacgcgccg attacgagca gcatggttac
     101  attgcatatc aaacagcgtc ctctgccttt ccgatggaac attattagcg
     151  cagagaatcc caggcgtgca gaagagtggc agctacaaca cgtcatcgag
     201  caattcccgc atccgggtga tggctgccta ccactgcggc gcagaatggg
     251  caatagcgat gggcgatgac gctctggagt cagcttgctc gaacctcggg
     301  cgttacaaat cgctcggttt caaagtcgag gagtcctcaa aactggaatt
     351  ctgttctcac atttttgaga aagaggacct cgccattccg gtcaacaagg
     401  ccaaaatgct ttacaagctc atacatgggt atgaaccgga atgcggcaac
     451  gtggaagtgc tgatcaatta tttggccgcc tgtttctcaa ttctgaatga
     501  gttgcggtcc gatccttccc ttgtcgaaac tctccaccag tggctggtcc
     551  ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca
     601  agcatacacg agttgcaagc attggaagta taagtctcgt taccaagagt
     651  ccacacaata gattacaaat ttctcgcagg attttctagc ggtctattgt
     701  ctgcagtacc agttacggta ataggactct attttgtcta cctaaagatt
     751  tcagcacacg tgcgatcaat tgttaatgaa tacggccgtg gctaggaatc
     801  aaaatgcagg gaggcggagg cgaagaaatc agcgctctat acggcgcgac
     851  cgcgtggttg tggtcaaccc ctctggggga tcatcacgcg gaagacgaca
     901  acgaagaaac cgccgacgcc ctaatcgagg aggcagagct agaggaagga
     951  gcccaggcga aacattcgta ttttcaaagg acaatctcac gggcagttcc
    1001  tcaggaagta tcaccttcgg gccgtctcta tcagagagcc cagcattcag
    1051  ctctggaata ctcaaggcct accatgaata taaggtcatc atggtccagc
    1101  tggagttcat ctccgaggcc tcttccacct cctcgggctc catctcttat
    1151  gagttggacc cccactgcaa gcttagctcc ctccaatcca cgattaataa
    1201  gtttggaatc accaagaatg gattgcgacg ttggacagct aagcagatca
    1251  acgggatgga atggcatgac gcaactgagg accaattcaa gatcctctac
    1301  aaagggaacg gatcttcctc ggttgcaggc agctttagga tcaccatcaa
    1351  gtgccaggtc