Sequence of DPV Soybean dwarf virus

Soybean dwarf virus isolate KY-1 coat protein and movement protein genes, complete cds.

ACC No: EU306576

Dated: 2011-03-24 | Length: 603 | CRC: 34654818

                
ID   EU306576; SV 1; linear; genomic RNA; STD; VRL; 603 BP.
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AC   EU306576;
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DT   03-NOV-2008 (Rel. 97, Created)
DT   24-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Soybean dwarf virus isolate KY-1 coat protein and movement protein genes,
DE   complete cds.
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KW   .
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OS   Soybean dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
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RN   [1]
RP   1-603
RX   PUBMED; 21256532.
RA   Schneider W.L., Damsteegt V.D., Stone A.L., Kuhlmann M., Bunyard B.A.,
RA   Sherman D.J., Graves M.V., Smythers G., Smith O.P., Hatziloukas E.;
RT   "Molecular analysis of soybean dwarf virus isolates in the eastern United
RT   States confirms the presence of both D and Y strains and provides evidence
RT   of mixed infections and recombination";
RL   Virology 412(1):46-54(2011).
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RN   [2]
RP   1-603
RA   Stone A.L., Schneider W.L., Damsteegt V.D.;
RT   ;
RL   Submitted (26-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, FDWSRU, 1301 Ditto Avenue, Ft. Detrick, MD 21702, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .603
FT                   /organism="Soybean dwarf virus"
FT                   /host="Trifolium repens"
FT                   /strain="Yellowing"
FT                   /isolate="KY-1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Hopkins County, KY"
FT                   /collection_date="1990"
FT                   /db_xref="taxon:12049"
FT   CDS             1. .603
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:B6RQZ4"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:B6RQZ4"
FT                   /protein_id="ACA04428.1"
FT                   /translation="MVAVSNVAIQRRRNRRAARRAPRVQLMAIPTTTSRPQRRGRQRRR
FT                   RRNNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPLSDGILKAYHEYK
FT                   ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE
FT                   WHDTSEDQFKIHYKGNGDSKIAGSFKISINVLTQNAK"
FT   CDS             17. .586
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RQZ5"
FT                   /protein_id="ACA04429.1"
FT                   /translation="MSQYNDDAIVGQQDALHEFSSWLFQRPPADHNAEDDNDDEGEIIE
FT                   EEAIFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY
FT                   YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSVSQRAVRRDSPQELSMASNGMIPV
FT                   KINSRSTTRGMETPRSQAPSRSRSMS"
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SQ   Sequence 603 BP; 190 A; 154 C; 133 G; 126 T; 0 other;

eu306576 Length: 603  24-MAR-2011  Type: N  Check: 9225  ..

       1  atggtcgcgg ttagcaatgt cgcaatacaa cgacgacgca atcgtagggc
      51  agcaagacgc gctccacgag ttcagctcat ggctattcca acgaccacca
     101  gcagaccaca acgcagagga cgacaacgac gacgaaggag aaataataga
     151  ggaggaagct atatttccgg aggatcaggc aaggctcaca cattcgtgtt
     201  ttcaaaggac ggcatcaatg gtagttccaa gggaagtatc actttcgggc
     251  cgtctttatc agaatgcaag ccactctctg atggaatact caaggcctac
     301  catgaatata agatcacgag tatcttatta cagttcatca ccgaggcctc
     351  ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
     401  actccgaaat tcaatcgcta ctcaataaat tcagtatcac aaagagcggt
     451  tcgaagagat tccccacaag agctatcaat ggcctcgaat ggcatgatac
     501  cagtgaagat caattcaaga tccactacaa ggggaatgga gactccaaga
     551  tcgcaggctc cttcaagatc tcgatcaatg tcctaacaca gaatgctaaa
     601  tag