Sequence of DPV Soybean dwarf virus

Soybean dwarf virus isolate VA-D coat protein and movement protein genes, complete cds.

ACC No: EU306589

Dated: 2011-03-24 | Length: 603 | CRC: -1901176542

                
ID   EU306589; SV 1; linear; genomic RNA; STD; VRL; 603 BP.
XX
AC   EU306589;
XX
DT   03-NOV-2008 (Rel. 97, Created)
DT   24-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Soybean dwarf virus isolate VA-D coat protein and movement protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Soybean dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-603
RX   PUBMED; 21256532.
RA   Schneider W.L., Damsteegt V.D., Stone A.L., Kuhlmann M., Bunyard B.A.,
RA   Sherman D.J., Graves M.V., Smythers G., Smith O.P., Hatziloukas E.;
RT   "Molecular analysis of soybean dwarf virus isolates in the eastern United
RT   States confirms the presence of both D and Y strains and provides evidence
RT   of mixed infections and recombination";
RL   Virology 412(1):46-54(2011).
XX
RN   [2]
RP   1-603
RA   Stone A.L., Schneider W.L., Damsteegt V.D.;
RT   ;
RL   Submitted (28-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, FDWSRU, 1301 Ditto Avenue, Ft. Detrick, MD 21702, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .603
FT                   /organism="Soybean dwarf virus"
FT                   /host="Trifolium subterraneum"
FT                   /strain="Dwarfing"
FT                   /isolate="VA-D"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Blacksburg, VA"
FT                   /collection_date="1990"
FT                   /db_xref="taxon:12049"
FT   CDS             1. .603
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q3YB88"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q3YB88"
FT                   /protein_id="ACA04454.1"
FT                   /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT                   RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT                   ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT                   WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT   CDS             17. .586
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RR03"
FT                   /protein_id="ACA04455.1"
FT                   /translation="MSQFNDDVIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT                   EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT                   YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT                   KTNSRSTTRGTETPRSQAPSRSRSLS"
XX
SQ   Sequence 603 BP; 184 A; 159 C; 133 G; 127 T; 0 other;

eu306589 Length: 603  24-MAR-2011  Type: N  Check: 9490  ..

       1  atggtcgcgg ttagcaatgt cacaattcaa cgacgacgta atcgtagagc
      51  cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
     101  gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
     151  ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
     201  ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
     251  cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
     301  catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
     351  ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
     401  actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
     451  tcgaaacgat tccccaccaa ggttatcaat ggcctcgaat ggcatgatac
     501  cagtgaagac caattcaagg tccactacaa ggggaacgga gacgccaaga
     551  tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcctaaa
     601  tag