Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate 06JN2 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds.
ACC No: EU332330
Dated: 2011-07-07 | Length: 5709 | CRC: -1153114270
ID EU332330; SV 1; linear; genomic RNA; STD; VRL; 5709 BP.
XX
AC EU332330;
XX
DT 22-JAN-2008 (Rel. 94, Created)
DT 07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAV isolate 06JN2 RNA-dependent RNA polymerase,
DE P1, aphid transmission protein, coat protein, movement protein, and P6
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5709
RX PUBMED; 21326861.
RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.;
RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf
RT virus-PAV";
RL PLoS One 6(2):E16896-E16896(2011).
XX
RN [2]
RP 1-5709
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Population genetic diversity of BYDV-PAV from China";
RL Unpublished.
XX
RN [3]
RP 1-5709
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (07-DEC-2007) to the INSDC.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5709
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="wheat"
FT /isolate="06JN2"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="China:Jinan"
FT /db_xref="taxon:12040"
FT CDS join(142. .1161,1161. .2747)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /db_xref="GOA:B0FKY8"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FKY8"
FT /protein_id="ABY73679.1"
FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD
FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR
FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA
FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTHTPQQLALSYS
FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM
FT GNKLIMCGMMHAYFKKQGVEAELCNNGDDCVIITERANEYLFGGMYDHFLKYGFNMVTE
FT TPVYELGELEFRQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSVEYIKNVISYGTDERLQGRRTFEETPITTDNR
FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY"
FT CDS 142. .1164
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:B0FKK7"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FKK7"
FT /protein_id="ABY73680.1"
FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD
FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR
FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT "
FT CDS 2906. .4846
FT /codon_start=1
FT /transl_except=(pos:3503. .3505,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /db_xref="GOA:B0FKZ0"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B0FKZ0"
FT /protein_id="ABY73684.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP
FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF
FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW
FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY
FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRANNIL
FT IDEGFCQPLSTITDQGLCDVQTPGQEQEVVEEDRQTVSTESDIALKEYEAATAEIPDAE
FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYADDVPPGTRQKLRDAAK
FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL
FT TAAKAYKAQFS"
FT CDS 2906. .3505
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /db_xref="GOA:B0FKK9"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B0FKK9"
FT /protein_id="ABY73681.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK"
FT CDS 2946. .3407
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B0FKZ2"
FT /protein_id="ABY73682.1"
FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA
FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL
FT RRALCLLNSTPRASNQPYLATLTHSPSVNPPQSPSAQRRLEGPNSRRHR"
FT CDS 4975. .5097
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:B0FKZ3"
FT /protein_id="ABY73683.1"
FT /translation="MDDLRVIALCALSSTILFTIALVSSWCVSCCKFIDAACSV"
XX
SQ Sequence 5709 BP; 1607 A; 1399 C; 1373 G; 1330 T; 0 other;
eu332330 Length: 5709 07-JUL-2011 Type: N Check: 2727 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgca acagagtcct acagttgctt
101 gacacgcctg tagccccctt cttccccttt cactcgccat catggtgttc
151 tttgagatgc tcatcggtgc cagtgtcaag gctgtcaaag atttcatcag
201 ccactgctat tccaggctca agagtatata ttactctttt aagagatggc
251 tgcttgaaat atccgggcaa tttaaggccc atgacgcctt tgtcaacatg
301 tgctttgggc acatcgctga catcgaggac ttcgaggcgg aacttgctga
351 ggagtacgcc gagaaggagg aggagatcga ggaagcgcga agcttgctcc
401 gcttattaac tgcccagaag tccaaatctg gggtggacga ggcttggacc
451 gacttctttt tgaagtcgag aggcggcgtt tatgcgccac ttaactgcga
501 gccaaagtcc atagagcttg atgccaaagc ggacaagttg gagaagctcc
551 ttgaggacat gcacctgttt gaggtgcgcg cggccaagac ctacatcaag
601 gagaagggcc gcggattcat caactgctgg aatgaccttc gatcaaggtt
651 gcagttggtg aagtctgtca aagacgaggc caaggacaac atcaaagcgg
701 cctccaagat tggtgtggag ttctctgctc caaccaatat tgctgatctc
751 tacacattca ctgaggtaac aaaggtagag acaggtctta ccaaggagac
801 aactagggtt gtcaacgggg aggaggagac ctccaccgta cccctggttg
851 aggacgtccg aaagatcaag gacgatgaag ttagcaggga gagtgcctcc
901 aattggatca gggaggtaat caaattgaaa aattccaccc tttctgctga
951 cgagctttcc ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa
1001 aatacaaact tgacattgct tccaaaacat atcttaagca atgtgcaatg
1051 atttctgtac caatcccctc ccaaaaagat ataaaaacaa agatggtgat
1101 ccaaagccct gctgcccgtg cactgcgtga gcgcgtggca gttcttgact
1151 cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat
1201 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc
1251 cgtaaggtta gtagtaatat taattacctt acccaaaccc atctaggcct
1301 tgtatataaa gcacccaatg catccctgca caacgcgctc gtagccatcg
1351 aaaggagagt gtttacagta ggaaaggggg attctgctat ctaccccccc
1401 cacccggaat atgacatttt ctcagagaca atgggttact ttgctgagtc
1451 cattgtcaac aaggtgggat actgcaaaac acacacccct cagcaattgg
1501 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag
1551 tccttgaaga aggaaccata tcaaatgaag gactcaaacg tgcaggcatt
1601 cctcaagaag gagaaacact ggatgaccaa agccatcgcc ccgcgcctaa
1651 tctgcccccg ctccaagcgg tataatatca tcctaggaac tcgtttgaaa
1701 ttcaacgaga agaagatcat gcatgccatc gacggtatgt ttggatcccc
1751 cactgtgctt tcaggctatg acagctttac ccaaggcaga atcatagcca
1801 gtaagtggca aaagtttgca tcacccgttg ccatcggtgt tgatgccagc
1851 cgctttgacc aacatgtgtc tgagcaggcg cttaagtggg aacacgggat
1901 atacaatggc atttttggcg acaatgaatt ggcccttgct ctcgaacatc
1951 agctcgtaaa taatattaag atgttcgttg aggataagat gctaaccttc
2001 aaagttaggg gccatagaat gtcaggggac attaacacca gcatgggaaa
2051 caagctcatc atgtgcggca tgatgcatgc ttactttaag aagcagggtg
2101 ttgaagcaga actttgcaac aatggagatg attgtgtcat cataactgag
2151 agggctaatg aatacctttt cggtggaatg tatgaccatt tccttaaata
2201 cggcttcaac atggtgacgg aaaccccggt ttatgaactc ggggaacttg
2251 aattccgcca atccaaaccc gtcagaattg gtggcaatta tagaatggtc
2301 cgcaggcccg actgcatagg aaaagatagt aacacacttc tgagtatgcg
2351 caacgagtcc gacgttaaaa gctatatgtc ggctgtggct cagtgtggtc
2401 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgcctg
2451 tacagaagct cggggtacaa gaaagtaagt gtggagtaca tcaaaaacgt
2501 catatcatat ggaacagatg aacgccttca aggtagacgt acctttgagg
2551 agacacccat caccactgac aatcgtatgt catattggga atcatttgga
2601 gttgacccta agattcaaca acttgtcgag aggtactacg acaatcttac
2651 ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat
2701 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta
2751 ccaaatctta gccgggtttg ggatagggtt tatcgctagt attccctgta
2801 cattagctct cgcgtacttt atttacaata aggtttccaa caccaccaga
2851 gaggtggtga ttgacactta taataaagct tcagacacca ctagagaggt
2901 ggtgaatgaa ttcagtaggc cgtagaggac ctagaagagc aaacaatggc
2951 acacgaaggc ggcgccgtcg agcaattcgg ccagtggttg tggtccagcc
3001 caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa
3051 ggccaggttc tgtatttgga ccaaaacgcg gggctgaggt attcgtattc
3101 tcagtcgaca accttaaggc caactcctcc gggatcctca aattcggtcc
3151 cgatttatcg caatgcccag cggtttcaga cggagtactt aagtcctacc
3201 acaattacaa gatctcaagt atcaacgttg agtttagaac acacgcgtcc
3251 gccactacgt cgggcgctat gtttattgaa ctcgacacct cgtgcaagca
3301 atcagcctta tctagctaca ttaactcatt caccatcagt aaatccgcct
3351 caaagtcctt ccgcgcagcg gagattggag ggacccaatt ccaggcgaca
3401 tcggtgaatc aattctttct tttgtacaag gcaaacggca ctacaactga
3451 tattgcaggg cagttcatca tcagaattga gcttcatcta atgactgcca
3501 aataggtaga ctcctcaaca ccggaaccaa aacccacacc agctccaaca
3551 cctgccccaa cacctgagcc aaaaccagag cccacacctg cacctcctcc
3601 caagcgtttc tttgagtatg ttgggactcc gataggggtc atatctactc
3651 gagagaacac cgacagcata tcggtgtcca agctcggtgg ccagtcgatg
3701 cagtatatag aaaacgagaa gtgtgaaact aaaaccatcg attccttctg
3751 gagcacaaac aacaacgttt cggcacaagc tgccttcgtt tttccagtgc
3801 cagaagggtc gtacagtgtg aatatctcgt gtgaaggttt acaatccgtt
3851 gaccacatcg gtggcaacga ggatggctac tggatcgggc tcattgccta
3901 ctccaattca tcaggcgaca actggggtgt aggtaactat aaagggtgtg
3951 tgtttacaaa ttttctggca acgaacacct ggagaccagg acacaaggat
4001 ttgaaactta acgattgcca gttcacagat ggacaaatag ttgaaaggga
4051 tgcagttatg tctttccacg tagaggcttc tggcaaagat gcctgcttct
4101 acctgatggc tcccaaaaca atgaaaacag acaagtacaa ctatgttgtc
4151 tcgtatggag ggtacacgaa caagagaatg gagttcggta ccatttctgt
4201 gacatgtgat gaatccgatg ttgaggcact ccgcatgact cggcactctg
4251 agtgccccac ccgcgcaaat aacattttaa ttgatgaggg attttgtcag
4301 cctctttcca ccataactga ccaagggctg tgtgatgtgc aaactcccgg
4351 ccaagaacaa gaggtggttg aggaagacag acaaactgtt tccactgaat
4401 ctgatatagc gctcaaggag tatgaagcgg ccaccgctga aatccctgac
4451 gctgaagagg atgctttacc ctctcgggaa caactctcat ccaaaccagt
4501 tgacacgtca ggggaggaga tccccaaacc cagaccccca agcaatgagg
4551 ttctgggtgt ctaccaagga cagcccattt atgctgacga cgtgccacct
4601 ggtacaaggc aaaagctacg tgatgccgcc aaagcacctt ctaccctgtt
4651 gtacgacaag accccaaaac ggtccaaatc tattttgtcc aggtttatag
4701 aagggaacag gtcctctgta gaatctgctg ccccctccac agctactaca
4751 tccaatttaa caagggagca gctccgggaa tatacccgca ttaggaatac
4801 cttaggttta acagctgcaa aggcgtacaa ggctcaattc tcgtgaagac
4851 aacaccactc gcacaaatcg gatcctggga aacaggcaga acttcggttc
4901 gtaagctcgg gtgactggaa ggtgggctgt caacccacca ccgactcacc
4951 gccgtatcgt actgtgtgtg gccgatggat gatcttcgcg ttatcgccct
5001 ctgtgctctg tcatcaacta tactgtttac cattgcgttg gtgagtagtt
5051 ggtgtgtaag ctgttgcaag ttcatagacg cagcttgttc tgtgtaagct
5101 gcaaccaaaa atatcgggga gcttctgctc agtgagagga ttaacgaccc
5151 tcggtaatgg ttggtcctgg caggcctgaa taacctgcta taggacaact
5201 ggaaacccac cagtgatcaa ataaggtagc ttacttctga gctgtacact
5251 gtccctgcgc aatcggggta aacaactata accacccaac tcgatgaaac
5301 gagagtggag gtggcggagt gggtgacttc gtgatgtaca cccgagcgtt
5351 aggtttgaag acgccataaa acacaacgaa atgagaacct cgttataaaa
5401 gttcctcggc tgatacaccc agtcgactgg acctgctggc atacccttga
5451 tacggaacaa gggcttctga gagccactac ctgtgatgca aggtagggta
5501 agagtcttag caacctctgt actcggaagt ggacataaac catagcactc
5551 cagcagcatc ccagaagaga gttttcctca acaggtgaaa acgtgccacg
5601 ggcctgtttc aagcaatcta gctctgcttg agacagtatc tcatagaagc
5651 aatcctatgg ggggactgga ttctgactgc cgacactcgc aagagaagtt
5701 cggcatccc